Caldicellulosiruptor diazotrophicus: CaldiYA01_07250
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Entry
CaldiYA01_07250 CDS
T08057
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cdia
Caldicellulosiruptor diazotrophicus
Pathway
cdia03030
DNA replication
cdia03430
Mismatch repair
cdia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CaldiYA01_07250 (polC)
03430 Mismatch repair
CaldiYA01_07250 (polC)
03440 Homologous recombination
CaldiYA01_07250 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdia03032
]
CaldiYA01_07250 (polC)
03400 DNA repair and recombination proteins [BR:
cdia03400
]
CaldiYA01_07250 (polC)
Enzymes [BR:
cdia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CaldiYA01_07250 (polC)
DNA replication proteins [BR:
cdia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CaldiYA01_07250 (polC)
DNA repair and recombination proteins [BR:
cdia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CaldiYA01_07250 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
RNase_H_2
DEDDh_C
HHH_3
T2SSK
DNA_pol_A_exo1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BCS80765
UniProt:
A0ABN6E5T3
LinkDB
All DBs
Position
797199..801407
Genome browser
AA seq
1402 aa
AA seq
DB search
MSEALFLPVKPVKIEFDKSSMDLKVYVESLDNLKDIDLIGIEQRFKSLLESCRDVEIKLF
KTRNLTLEELLKKYRWFLFYKISKRCNGLSHFLRECEIVQSSSGLDFLVPNGIRDILFER
KVDVLVKQILSEEFGIVCDVDFKIKDFFIQFDTDQEVEKYLRLSEEKKEETEKITSEKNE
VETDPTIIFGKKIDEKKEVTPISLVKVGTDCVIEGEIFNLEIKETKNQNVLIYKLYITDY
LNSTFVKIVAKKDKIPTSISVGDYVKVEGRVEFDDFEKAVVVNAKNINKSQKPQRLDTSD
NKRVELHAHTKMSAMDAVCSAEEIIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIK
VIYGMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIETTGFDSQRDRIIEIGAVKIENGQI
TERFSTFVDPEGKIPVRISELTGIYQDMVDKAPKLSDVILEFEKFASGSVLVAHNAQFDI
GFLKKAYHECGIIFDYTYIDTLELSRRLLTDLSSHKLNKVAEFLNIELKHHHRADSDAET
TAGIFISLVERLKARGYKWLKEFNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY
SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIEKIAAFYDFLEI
MPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQILK
HNQGYDDVENDPQLYFRTTDEMLKEFEYLGSDACYEVVVENTNKIADMIEDVKPIPDETF
PPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSK
SLSDGYLVGSRGSVGSSLVATMCGITEVNPLPPHYVCPHCKYSEFITDGSVGCGYDLEDK
NCPRCGEKLKKDGHDIPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRA
GTISTVAEKTAHGFVTKYAEEKGLSLHPAEILRLSQGCTGVKRTTGQHPGGLMIVPRDKE
IFDFTPIQHPADSTDKSVITTHFDYHAISGRLLKLDILGHDDPTVIRMLQDLTGVDPRSI
PLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKPKTFAELVRIS
GLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKDSFRIMEDVRKGKG
LKPEDEQLLRAHNVPDWYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYF
TVRADDFDYATIIKGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPV
DLNESDAERFIIKDGGLLIPFSALPNVGVAAAKSIVEARKEGRFLSVDDLIRRAKLNKQV
IEILTQYKVLKDLPQTSQLSFF
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggctctatttttgccagtaaaacctgttaagattgagtttgacaaatcaagt
atggatcttaaggtttatgttgagagccttgataacctgaaagatattgacctcattgga
attgaacaaagattcaagtctcttttagaaagttgcagagatgttgagataaaactcttc
aaaaccagaaacctgacgttggaagaacttttgaaaaaatatagatggtttttgttttat
aagatttcaaaaagatgtaacggtcttagccattttttgagagaatgcgagattgtgcaa
agttcaagcggcttagattttttggttccaaatggtatcagagatattctttttgaaaga
aaagtagatgtgcttgtaaagcaaatactgtctgaagagttcggaatagtatgcgacgtg
gattttaagattaaagacttttttatccagtttgatacagaccaagaagtagaaaaatat
ctaaggcttagcgaggaaaagaaagaagaaacagaaaaaattacaagtgaaaagaatgag
gttgagacagacccgaccattatatttggcaaaaagatagatgaaaagaaagaggtaact
cctatttctcttgtcaaagttggtactgattgcgtgatcgaaggtgaaatttttaatctt
gagataaaagagactaaaaaccaaaatgtgctcatatacaagctttacatcacagactat
ttaaattcaacctttgtaaaaattgttgctaagaaagataaaattcctacttcaatttct
gttggagattatgttaaggttgaaggcagggtagaatttgacgattttgaaaaagcggtt
gtggttaatgctaaaaacataaacaaaagtcaaaaacctcagcgacttgatacaagcgat
aacaagagagtagaacttcatgctcacaccaaaatgtctgctatggatgctgtgtgctct
gcagaggagattataaaattggcagcttcaatgggacacagagcagttgcaataacagac
catggagttgttcaagcgtttccagaagcacaggaggctagcaaaagctgtaatatcaaa
gttatctatgggatggaatgctatcttattgatgacggcgcgccagttgtttacaatcct
aaggaaggacaaggatttgactctacctttgtggttgttgacattgaaacaacagggttt
gacagtcagagagatagaataatagaaattggtgctgtgaagatagaaaacggtcaaata
acagagagattttctacatttgtcgaccccgaaggcaaaatccctgtcaggatatcagag
ctaacaggcatataccaagatatggttgataaagccccaaagctgagtgacgtcatttta
gaatttgaaaagtttgcgagcggtagcgttcttgttgcgcacaacgctcagtttgatatt
ggatttttgaaaaaggcgtaccatgagtgtggaattattttcgactatacatatatcgat
acgctggaactttcaagaaggcttttgacagacctttcttctcataagttaaacaaagtt
gctgagtttttaaatatagagttaaaacatcatcacagagctgattctgacgcagaaaca
acagctggtatctttatttctcttgtggaaagattaaaagcaagagggtacaaatggtta
aaagaatttaattcaattgagtcaaacgcaaaagcagacctcaagtctcacagctatcat
gcaactatacttgtaaagaaccagcaggggttaaaaaatctctacaaactggtatcgtat
tctcatttagaatacttctataaaaggccaaggatacccaaaagtcttttgatacaatta
aaagatggacttttgataggaagtgcgtgtgagtccggtgaaattttcagggccttttta
gaaggaaaaagtgaggaagagatagaaaagatagcagcattttatgatttccttgagata
atgccggttgagaataattcttttttgattagagaaggatacttaaaagatgaagaagat
ttaagagaaatcaataaaaagatttacaatcttggcaaaaaacttggcaagcttgttgtt
gcgacatctgatgcgcactattgtcatccacaccagagagtgttgcgccagattttaaaa
cataaccaagggtacgatgatgttgaaaatgacccacagctttatttcagaacaactgat
gaaatgctcaaggaatttgaatatcttggcagtgatgcttgttatgaagttgttgtagaa
aataccaataagattgccgatatgatagaagatgtaaaaccaatacccgatgagactttc
ccacccaagattgagggtgctgaggaagaaatatacaacatgacaatgaagaaagctcac
gaaatatatggagaccctcttccggaaattgtaagagcacggcttgaaaaggaactgaat
tcgataatcaagaatggttttgcggtgatgtatttgattgcccaaaaacttgtatctaaa
tctttgtcagatgggtatcttgttgggtcacgagggtctgttggttcttctcttgttgcg
acaatgtgtgggataacagaggtaaatccgttgcccccacattatgtttgtccacactgt
aagtattccgagtttataacagatggttctgttggatgtggttatgacttggaagacaaa
aactgtccacgctgtggggaaaaacttaaaaaagatgggcacgacataccgtttgagacc
tttttgggatttgatggggataaagaacctgatattgaccttaacttttctggtgattat
cagccaattgcacacaagtttacagaagaactgtttggacaaggttatgtgttcagagct
ggtacaatatcaacagttgcagaaaagacagcacatggttttgtaacaaagtatgcagaa
gaaaaaggtttgagtcttcatcctgcagagattttgagactttctcagggttgcacagga
gtaaaaagaacaacaggccagcatcctggggggcttatgattgttccaagagacaaagag
atatttgattttacaccaatccagcatccggcagatagcactgacaaaagcgttatcaca
acgcactttgattaccatgctatctcaggaagacttttgaagcttgatattcttggccac
gacgacccgactgtcatacgaatgctccaggacttgacgggagttgacccgcgttcaatt
cctcttgatgacaaagatacgatgtcaatttttacaagcacagaagctcttggaatttct
cctgaggacatagattgtgaagtagggactttcggtatacctgagtttggtacaagattt
gtaagacagatgttaattgagacaaaaccaaagacgtttgctgaacttgttcgtatttca
ggtctttcgcatggcacaaatgtgtggacaaacaatgctcaggatttagtaagaaatgga
attgcaacgctcaaagaggtaatttctacaagagacgatattatgttatatttaattcaa
aagggtgttccaccaaaagacagtttcagaatcatggaagatgttagaaaaggtaaagga
ttaaagccggaggatgagcagcttctaagagctcacaatgtaccggactggtatatagag
agttgcaaaaagataacgtacatgttcccaaaagcacatgctgcagcgtatgtaatgatg
gcgttcaggattgcatatttcaaagtacattataaggaggctttctatgcaacatatttt
acagtcagagcagacgactttgattatgcaacaatcatcaaggggagagatgctataagg
cagaagataagggatttggaaaacaggataagtagtctttctcagaaagacaaaaacctt
ctgacagtgcttgagattgcaaatgaaatgttagcacgaggtctaaaattttaccctgtt
gatttgaatgagtctgatgcagagaggttcatcataaaagatggaggacttttaatacct
tttagtgctctgccaaatgttggggtggcagctgcaaaaagtattgttgaggcgagaaaa
gaaggaaggtttttgtcggtggatgaccttataagacgtgcaaagctaaacaagcaggta
atagagattttgactcagtataaagtgttgaaagacttgcctcaaacaagtcagctaagc
tttttctaa
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