Caldicellulosiruptor diazotrophicus: CaldiYA01_12470
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Entry
CaldiYA01_12470 CDS
T08057
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cdia
Caldicellulosiruptor diazotrophicus
Pathway
cdia03030
DNA replication
cdia03430
Mismatch repair
cdia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CaldiYA01_12470 (dnaE)
03430 Mismatch repair
CaldiYA01_12470 (dnaE)
03440 Homologous recombination
CaldiYA01_12470 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdia03032
]
CaldiYA01_12470 (dnaE)
03400 DNA repair and recombination proteins [BR:
cdia03400
]
CaldiYA01_12470 (dnaE)
Enzymes [BR:
cdia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CaldiYA01_12470 (dnaE)
DNA replication proteins [BR:
cdia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CaldiYA01_12470 (dnaE)
DNA repair and recombination proteins [BR:
cdia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CaldiYA01_12470 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
BCS81287
LinkDB
All DBs
Position
complement(1299800..1303222)
Genome browser
AA seq
1140 aa
AA seq
DB search
MNFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIK
PIIGCEVYLAPRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVSIGFVEGFYYKPRVD
REVLSKYSKGLIALTSCLAGEIPKLILREQKERLHNAINFYKEVFGKNFYFELQYHYIDE
QRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTINDSNRMEFPTDE
FYLKSPEEMYQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPKGKNDAFEYLKEL
ALEGFKKRYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVQDFINYAKQNNIMVGPGRGSA
AGSIVAYCLGITNVDPIKYDLIFERFLNPERVSMPDIDIDFCYQRRQEVIDYVTRKYGED
RVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTIDKALEINHELKKVY
ERNNTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPLARTDDAIVTQFPMTTLE
ELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDKIDYNDKNVYEFISEGNTNGVFQL
ESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKNNREKIEYLHPSLEPILN
VTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILMEEKSRFIEGAIANGIDK
EVAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKRYYTIEFMTSLITSVMNSNEKVG
MYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLGENIIAHILKEREEKGEF
KDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASVEDILVIKQAKKKNANQF
SFFEISGNENESFEYKNMPQPTAHDLIRMEKDTIGVYISSHPLEKYIEEISKYNVTPLSE
ISTMTEEDEYKFGQILVCGILKDIKVKLTKNNQTMAFAKLEDLTDSVEVLFFPTVYERYS
QLIKEDMIVIMEAKATFREDEGVKIIAQKVDRLANDKHQEGQESGEKAIAIRVSDDTILK
SKKFLAFVKFFAGKSKIVLYYNQKRLISKSNLCIEINPTVIEQLREWFGNENVWLEDIDS
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgttcatcttcaccttcacacagagtatagtttgttagacggggcttgtagg
atcgataggctttttgaaagggtaaaagagctgaatatgaatgctgtagcaataactgac
catggagcaatgtatggtgttatagatttttataaagctgccaaggaaaatggtattaag
cctataattggatgtgaggtatatttagctccacgaactcgctttgataaagaaccaaat
atcgacaatgatatccatcatcttgtccttcttgctatggacaatgatggttacagaaat
ctttctaagatagtttcaattggatttgttgaaggattctactataaaccaagagttgat
agagaagttttgagtaagtattcaaaagggctcattgctcttacaagttgtcttgctggg
gaaattcctaagctaattttgagagagcaaaaggaaagattgcataatgcgataaatttc
tataaagaggtatttggcaaaaatttttactttgaacttcaatatcattacattgatgag
caaaggtttgtaaataatgaacttatgaggctgtcaaaaaaatatcaaattccgctcgtg
gcaactaatgatgtccattatttgaggagagaagatagaaatcttcacgatatcttactt
tgtattcaaacgggaaagactataaatgattcaaacagaatggaatttccaactgatgaa
ttctacctcaaatcacctgaagagatgtaccaactttttggttacattccagaagcatta
aaaaatacattggagattgctgaaaaatgcaatgttgagtttgagtttggtaagattaat
cttccgaaatttcaactgcccaaaggcaaaaatgacgcatttgaatatcttaaagagttg
gctttagaaggattcaagaaaagatattcaaaagatgacaaagcagcatatgacaggctt
atgatggagcttcaagtgataaaagatatgggatttgttgaatactttttgatagttcag
gactttataaactatgctaaacaaaataacataatggtaggacctgggagaggttctgca
gctgggagtattgttgcatactgtctgggtatcacaaatgttgacccaataaagtatgac
cttatttttgagagatttttaaatccagaaagagtatctatgcccgacatagatattgac
ttttgttaccaaagaagacaggaagtgattgattatgttactcgcaaatatggagaggac
agagtaagtcaaataattacatttggaacgatggcggcgagagcatcaatcagagatgtt
ggaagggttctgggaatcccatattctcaggtagacgaaattgctaagatgattccgttt
tctccagggatgaccattgacaaagcacttgagataaaccatgagcttaaaaaagtttat
gaacgaaataatacggtaagaaaaataattgatacagcaagaaatcttgagggtatgcca
agacatgcatctgttcatgctgccggagttgtgatttcaagttgtccaattacagattta
gtgccgttggcaaggactgatgatgctattgttactcagtttccaatgacaactttagaa
gaacttgggcttttgaagatggattttcttggtttgagaacactcactgtcattcaaaat
acgttggagcttgtgaaaaaaaatagaggtattgagattgatttggacaagatagactat
aatgataaaaatgtttatgaatttatatcagaaggaaacacgaatggtgtgtttcagctt
gaaagtagtggcatgaaacagtttatgaaagaactcaaacctgaaaacttggaggatatt
attgcaggaatttctctatttagaccaggacctatggaccagattccagtttacattcag
aacaaaaacaatagagagaaaattgaatacttacatcctagccttgaaccaattttaaat
gtaacctatggatgtattgtgtatcaagaacaagttatgcaaatttttagaacacttgct
ggatactcgcttgggagagctgaccttgtgagaagagcaatggcaaagaaaaaagctgat
atactgatggaagaaaagagcagatttattgaaggagctatagctaatggaatagataag
gaagtagctgaaaaaattttcgccattatagaagattttgcaagttatgcatttaataag
tcacatgctgctgcatatgctatattagcatatcaaacagcatatttgaaaaggtattat
actatcgagtttatgacaagcttaattacaagtgtcatgaactcaaatgagaaggtggga
atgtatattgaagagtgcaggaaatttgggatatctattttaccacctgatataaacaaa
agtagttatgactttacaattgaaggaaacagtataagatttggacttagagctataaaa
agtttgggcgagaacatcattgcccacatcctaaaggagagagaagaaaaaggtgaattt
aaggatttatacgattttataatgagggttgacacaaatactgtaaacaaaagaattatt
gaaaatttgatacgttcaggtgcatttgattttacaggtttaaataggaattcgctttta
gcttcagtcgaagacatacttgttataaaacaagctaaaaagaagaatgccaatcagttt
agtttttttgaaatatcaggtaacgaaaatgaaagttttgaatacaaaaatatgccacaa
ccaacagctcatgacctcataagaatggaaaaagatacaattggagtatatataagcagt
catccacttgaaaagtatatagaggaaatttcaaaatataatgtaactcctctctctgaa
atatctacaatgactgaagaagatgaatacaagtttgggcaaatactcgtgtgcggaata
ttaaaagacattaaagtaaaacttacaaagaataatcaaacaatggcattcgcaaaatta
gaagatttaacagattctgttgaagtattattttttcctactgtttacgaaaggtattct
cagttgataaaggaagatatgattgtgataatggaggcaaaggcaacattcagagaggac
gaaggagtgaaaattattgctcaaaaagtagacagactggctaatgacaagcatcaggaa
ggtcaagaaagcggtgaaaaagcaattgcaataagggtgagtgatgatacaatattaaag
tcaaaaaaattcttagcgtttgtaaaattctttgcagggaagtctaaaatagttctttat
tataatcagaaaaggctgatttccaagtcaaatttatgtatagaaataaatcctacagtg
attgaacagctcagagagtggtttggcaatgaaaatgtttggttagaagatatagattct
tga
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