Caldicellulosiruptor diazotrophicus: CaldiYA01_20160
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Entry
CaldiYA01_20160 CDS
T08057
Symbol
sigB
Name
(GenBank) RNA polymerase sigma-B factor
KO
K03090
RNA polymerase sigma-B factor
Organism
cdia
Caldicellulosiruptor diazotrophicus
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdia03021
]
CaldiYA01_20160 (sigB)
Transcription machinery [BR:
cdia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CaldiYA01_20160 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_3
KORA
GerE
DUF7645
Sigma70_ECF
MarR
HTH_38
Trp_repressor
DUF3791
IF2_N
Motif
Other DBs
NCBI-ProteinID:
BCS82056
LinkDB
All DBs
Position
complement(2101056..2101826)
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AA seq
256 aa
AA seq
DB search
MVDEKRTLEIDDEKIDRLFEEYQKTKAIELRNELVNKHLYIAEIIAKKFVGRGLDYEDLY
QVACIALINAVERFEPNKGYKFTSFATPTIMGEIKRYFRDRASIIRLPRRIYETSAKIKL
ATEVLSTKLKRPPKVEEIAQHLNMSTEEVLEIMEASNNYLPQSLEQTMYEDEEMTLGDVL
GKSDENILQVENVEAVKKAIERLSPFEREFVQKRFFEEKTQKEIAEEMNVSQMYISRLEK
KVLKKLKDFIEEKKEE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgaaaaaaggacattagagattgatgatgaaaaaatagatagactcttcgaa
gaatatcaaaagactaaggccattgaacttagaaatgaacttgtaaataagcacctttat
atagcagagattatagcaaaaaaatttgtgggaagaggactggactatgaagacctttat
caggtggcatgtattgcacttataaatgctgttgagaggtttgaacccaacaagggttat
aaattcacaagttttgccaccccaaccataatgggtgagataaaaagatattttagggat
agagcttcaatcatcagactaccaagaagaatctatgaaacctctgcgaagataaaactt
gcaacagaagtgctttctacaaaattaaaaagaccaccgaaggttgaagagattgctcag
catcttaacatgagcacagaagaagttttagagataatggaagcttctaacaactatctt
cctcagtctttagagcagaccatgtatgaagatgaagagatgacgcttggggatgttctt
ggcaagagcgatgagaacatcttgcaggtagaaaatgtcgaagctgtaaagaaggcaatt
gaaaggctttcaccttttgagagagagtttgttcaaaagcgattttttgaagagaagact
caaaaagaaattgctgaggagatgaacgtttcacagatgtacatttcacggcttgaaaaa
aaggtgctgaagaaattgaaggatttcattgaagagaaaaaagaggaataa
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