Corynebacterium diphtheriae NCTC11397: ERS451417_00102
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Entry
ERS451417_00102 CDS
T04861
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cdip
Corynebacterium diphtheriae NCTC11397
Brite
KEGG Orthology (KO) [BR:
cdip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdip03019
]
ERS451417_00102
Enzymes [BR:
cdip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ERS451417_00102
Messenger RNA biogenesis [BR:
cdip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ERS451417_00102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
AAA_11
ResIII
AAA_16
AAA_19
Helicase_RecD
AAA_25
AAA_22
nSTAND3
Flavi_DEAD
AAA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CKG59695
LinkDB
All DBs
Position
1:complement(91769..94114)
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AA seq
781 aa
AA seq
DB search
MSFNLSVIGAGLPVAQSTTTLIDALRTHRMAVVQAPPGTGKTTLVPPIAHNVTGGKVIVV
APRRVAVRAAAHHLEQLDRSSCDQPSTHRVGYTIRGERSRGDLVEFVTPGVLLRRLISNP
ELDGVSAVVVDEVHERQLDTDLVLGMLVELRELRDDLTVIAMSATVDAPRFAELLSPEHP
APIVETHAEIHPLELHYQPAAERIALSRSYMDHVCTVTQRAVAHSTDSALVFLPTIAAVT
TAVSALEQRTSVPVYPLHGQLTSSEQDAALRAGRQRIVVATSIAESSLTVPGVRIVVDAG
LSRVPKRDRARDLTGLVTTSTSQAQADQRAGRAGREGPGTVYRLYSAAEFQHFPDHVTPE
IRSADLTQAALCLTAWGCTDPAQFPLLSTPPKQSWEQAVDTLRDIGALNAAGQITELGRT
LATLPTDPRLGASLLHCGGGAAPTIAALSLDARGDIPRAIAAMSHQQRFTREVARLAGFV
PDSECTPGEAIARAWPKNVARRDGDSYLMAGGSRAELGVSSLSGHEWLAVAQASLTHRGS
VIRSAAPISEAAAVDIIGVAERTEATLVDGSLRGTRIRHSGAITLSTTNVKVEGELAEQA
LAEGIRTHGLELFTFSDKATELRDRLRHLHEYYGEPWPDVDAADPTLWLGPEIAALAAGT
PAARIDLYPALQRLLPWPEATRLDELAPAVLELPNGRRARISYAGDRPVLSTRLQDCFGL
LESPIVCGRPLQFHLLSPAGRPLAVTDTLDSFWAGPYQQVRSDMRGRYPKHPWPEDPLAI
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagctttaatctttctgttatcggcgccggtctgcccgtcgcacagtccaccacgacg
cttatcgacgccctgcgcacccatcgcatggcggtggtgcaagccccacctggcacaggt
aaaaccacccttgtaccacccattgcgcacaatgtaactggcggcaaggtgatcgtggtg
gcaccgcgcagggtggctgttcgtgctgccgcccatcaccttgaacagctcgaccggagc
agttgcgatcagccgagtacacatcgtgtgggttataccattcgtggcgagcgttctcgg
ggcgatctcgtggagtttgtcaccccaggtgtgctgttgcgcaggctgatttctaatccg
gagctcgacggagtctctgccgtggtggtcgatgaggtccatgagcgccaactcgacacc
gaccttgtccttggcatgcttgttgagctacgagagcttcgcgacgacctcacggtgatc
gcgatgtccgcaaccgtcgatgccccgcgctttgctgagctactgagcccagaacaccca
gcacctatcgtggaaacccacgcggagattcaccccttggagctgcattatcagcctgct
gccgagcgcatagcgctgagccgctcatacatggatcatgtttgcacagttacccagcgt
gcggtggcgcactccacggattccgcccttgtattcctccccaccattgccgccgtgacc
actgcggtttccgctttagagcagcgcacatccgtgccggtttatcctctgcatggccag
ttgactagttcggagcaagacgctgcgctgcgcgctggtcggcagcggatcgtggtggca
acgtcgatagccgaaagctctttgaccgtgccaggcgtgcgcattgttgtcgacgccggc
ctaagccgtgttcccaaacgcgatcgcgcccgtgacctcaccggcctggtcaccaccagc
accagccaggcacaagcagaccaacgtgcgggacgcgctggtcgtgaagggccaggcacc
gtataccgcctgtactcggcggcggagtttcagcacttccccgaccacgtcaccccagaa
atccgctccgccgatctcacccaagcggcactgtgtttgaccgcgtggggttgtactgat
cccgcccagtttccgctgctgagcacgcccccgaagcaatcatgggagcaggccgtggat
acattgcgcgacatcggcgcactcaacgccgcaggccagatcaccgaacttggtcgcacg
ctggctacgttgcctacggatcctcggctgggtgcgtcgttgctgcattgtggtggcggg
gctgcaccgacgattgcggcgctaagtcttgatgcccgtggggatattcctcgtgcaatc
gcggcgatgtctcatcagcagcgttttacccgcgaggtggcgcggttagcggggttcgtg
cctgattctgagtgcacaccaggggaagcgatcgcgcgggcgtggcctaaaaatgtggcg
cggcgcgatggcgacagctatcttatggcaggcggttcccgtgctgagctgggggtttct
agtctttctggccatgagtggcttgcggtggcgcaggcgtctctcacacatcgtggcagt
gttatccgctcggctgcccctatcagtgaggccgctgctgtggacatcatcggcgttgcg
gagcgcactgaggctacgcttgtcgacggctccctgcggggcacgcgcattcgccactcc
ggcgcaataacattgagcacaaccaatgtgaaagttgagggtgagctcgcggaacaggca
ctagccgagggtatccgcacccatggccttgagctgtttacgttctccgataaggccacc
gagctgcgcgatcgcctccgacatcttcacgagtattacggtgaaccgtggccggatgtt
gatgcagccgaccccaccttgtggcttggccctgagatcgcagcattggccgccggcacc
ccagccgcccgaatcgatctctaccccgcactccagcgcttgctcccgtggccggaggcc
acccgcctcgacgagctggcacctgctgtactcgagttgcctaatggtcgccgcgcccgt
atttcttatgctggcgaccggccggtgctgagcactaggcttcaagactgttttggcctg
ttggagtcccccattgtgtgcggccgcccgcttcagtttcatttgttgtcgcctgctggt
cgcccgcttgcggtgaccgacacgttggatagtttctgggcgggcccctaccagcaggtt
cgttccgatatgcgcggacgctaccccaagcatccgtggccggaggatccgttggctatc
cgttga
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integrated database retrieval system
