Corynebacterium diphtheriae NCTC11397: ERS451417_00371
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Entry
ERS451417_00371 CDS
T04861
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdip
Corynebacterium diphtheriae NCTC11397
Pathway
cdip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ERS451417_00371 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdip03021
]
ERS451417_00371 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdip03400
]
ERS451417_00371 (rpoC)
Enzymes [BR:
cdip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ERS451417_00371 (rpoC)
Transcription machinery [BR:
cdip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ERS451417_00371 (rpoC)
DNA repair and recombination proteins [BR:
cdip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ERS451417_00371 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CKG68302
LinkDB
All DBs
Position
1:358278..362288
Genome browser
AA seq
1336 aa
AA seq
DB search
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDDEARHADQTTLEAEMLLEKKDVEADMESEIAERAAKLEED
LAELEAAGAKADARNKVKKAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKDENEIGGQ
GAYAPATEEGPAQGVYSSYAEAIMARDRGVLGLQAKIKVRISHLRPPVDIEAEQFPEGWN
KGDVWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGTGKIMLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEARKIERKYWEQGALTERE
RYDRLVELWKDATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPVAVEVKDAEGNVTGYTGHSLIETSVAGRVAATAVKDAEGNVMVEPGENL
TDQLIDELIAAGVKEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLDDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLAEGDHVEIGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG
TLVDLSEAKAANAEALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
GEFTGASVPLDEAYDL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacttcttcgacgagcttcgaatcggcctggccactgccgacgacatc
cgccgttggtccaagggcgaggttaagaagccggagaccattaactaccgcaccctgaag
ccagaaaaggacggccttttctgcgagcgcatcttcggtccaacccgtgactgggagtgt
gcctgcggtaagtacaagcgtgtccgctacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtctaaggttcgccgtgagcgcatgggccacattgagttggctgcacca
gtgactcacatctggtacttcaagggtgttccatcccgcttgggctacctgctggacttg
gctccaaaggatcttgagcgcatcatctacttcgcagctaacatcatcaccagtgttgat
gatgaggctcgccacgctgaccagaccactttggaagcagaaatgcttctggagaagaag
gacgtcgaggcggacatggagtccgaaatcgccgagcgtgccgccaagctggaagaagac
cttgcagaactcgaagcagccggcgctaaagccgacgctcgcaacaaggtcaagaaggct
gccgagaaggaaatgcagcacatccgcgagcgcgcggagcgtgagatcgaccgccttgag
gagatctggcagaccttcatcaagcttgctcctaagcagatgatcatcgatgagaccatc
tacgaagagcttgtggaccgctacgaggattacttcaccggcggcatgggcgcagaggct
atccagaccctgatccgcaacttcgatcttgacgccgaggctgaggaactacgcgagatc
atcaacaacggcaagggccagaagaagatgcgtgccctgaagcgtctgaaggttgttgca
gccttccagcgttcaggtaacgacccagctggcatggttttggattgcattcctgtgatc
ccaccagagcttcgccccatggtgcagctcgacggtggccgctttgcaacctccgacctc
aacgacctataccgtcgtgtgatcaaccgcaacaaccgcctcaagcgcatgattgaactc
ggtgcccctgagatcatcgtgaacaacgagaagcgcatgttgcaggaatccgtggacgcg
ttgttcgacaacggccgccgcggtcgtccagtcaccggtcctggtaaccgtccactgaag
tccctgtctgacttgctcaagggcaagcagggccgcttccgtcagaacttgctgggtaag
cgtgtcgactactccggtcgttccgttattatcgttggtcctcagctcaagctccacgag
tgtggtctgcctaaactgatggctctcgagctgttcaagccgttcgtgatgaagcgcctc
gtggaaaacgactacgcgcagaacatcaagtcggcaaagcgcatggtggaacgccagcgt
ccagaggtgtgggacgtcctcgaagaggcaatttccgagcacccagtgatgctcaaccgt
gcacctaccctgcaccgcctgggtattcaggcattcgagccaaagcttgtcgagggtaaa
gcaattcagctgcacccattggcatgtgaagccttcaacgccgacttcgacggtgaccag
atggcagtccacctgccactgtccgctgaggctcaggcagaagctcgcatcctcatgctg
gcctcgaacaacattctttcccctgcatcgggtaagccacttgccatgccacgtctggac
atggtgaccggcctgtactacctgaccatggacaaggacgaaaacgagatcggtggccag
ggcgcatacgctccagcaaccgaagaaggaccagcacagggcgtgtactcgtcttatgct
gaggccatcatggctcgtgaccgcggcgttcttggcctgcaggctaagatcaaggtgcgt
atttctcacctgcgtccaccagtagacatcgaggctgagcagttcccagagggctggaac
aagggcgatgtttggttggcagacaccaccttgggtcgcatcatgttcaacgaactgctg
ccttggaactacccataccttgaaggtgtgatggttcgtaagggtggcggcaccggcaag
atcatgctcggtgacgtgattaacgacctcgcagcaacctacccaatgatcactgttgct
cagacgatggacaagatgaaggatgccggtttctactgggcaacccgttctggcgtgacc
atcaccatgtctgacgtgctcgttcttcctaacaaggaagaaatccttgaccgctacgag
gccgaggcacgcaagattgagcgcaagtactgggagcagggtgctctgaccgagcgcgag
cgttacgaccgcctcgttgagctgtggaaggacgctaccgacgaggttggtaacgccgtc
gagaagctctacccagacgacaacccaattccaatgatcgtgaagtcgggtgctgccggt
aacatgcgtcagatctggacgcttgctggtatgaagggcatggttgtgaactcgaagggt
gactacatcacccgcccgattaagacctccttccgtgaaggcctgtcggttctcgagtac
ttcaacaactcccacggttcccgtaagggtctggccgataccgctctgcgtaccgcagac
tccggttacctcacccgtcgtctcgtcgacgtggcacaggacgttatcgtccgcgaagac
gactgtggcaccaagcagggcattcgtgttcctgtagccgttgaagtcaaggacgctgag
ggcaacgtgaccggttacaccggacacagcctgatcgaaacctccgtggccggtcgtgtg
gcagctaccgcagtcaaggacgccgaaggcaacgtcatggtcgagccaggtgagaacctg
accgatcagcttatcgacgagctcatcgccgctggagtcaaggaagtcaaggtccgctcg
gtcttgacttgccagaccccaaccggtgtgtgcgcaaagtgctacggcaagtccatggca
accggcaagctggtcgacatcggagaagcagtcggtattgtggctgcacagtcgattggt
gagcctggtacccagctgacaatgcgtacgttccaccagggtggtgtcggtggcgacatt
accggtggtctgcctcgtgtccaggagctcttcgaggctcgtgttcctaagaaccgtgca
ccgatcgcttctgtcgcaggtaccgtccaccttgatgacgaaggcaacttctacaccctg
accatcaacccagacgatggatctgacgttgtggtctacgagaagctgtcgaagcgtcag
ggcttggcaactgtccgcgttccaatggaatccaacccaggtgccatgatcgagcgcacc
ttggccgagggtgaccatgttgagattggcgaccgcctgctgcgcggccctgccgatcca
catgatgtactcgaggttctgggtcgccgtggtgttgagcagcaccttgtcgacgaggtg
caggacgtctaccgtgcccagggtgtggctattcacgataagcacatcgaaatcatcatt
cgacagatgctgcgtcgcggaaccgtcatcgagtctggttccaccgagttcctcccaggt
acgctggtggatctgtccgaggctaaagctgcaaacgctgaggcattggcaaacggtggc
cagccagcagagcttcgctccgagatcatgggtatcaccaaggcttccttggcaaccgag
tcgtggctatccgccgcatcgttccaggaaaccactcgtgtgcttaccgacgccgctatc
aacaagcgctccgacaagctgatcggcctgaaggagaacgtgatcatcggtaagctgatc
ccagctggtaccggtatctctcgttaccgcaacatctccgtgaagccaacggaggctgca
cgaaatgccgcatactcgatcccaacatatggtgattcgatctacggtgatgatggctac
ggtgagttcaccggagcttcggttccactggatgaggcatacgacctctaa
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