Corynebacterium diphtheriae NCTC11397: ERS451417_00812
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Entry
ERS451417_00812 CDS
T04861
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdip
Corynebacterium diphtheriae NCTC11397
Pathway
cdip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ERS451417_00812 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdip03400
]
ERS451417_00812 (mfd)
Enzymes [BR:
cdip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERS451417_00812 (mfd)
DNA repair and recombination proteins [BR:
cdip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ERS451417_00812 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
AAA_30
DUF3638
Motif
Other DBs
NCBI-ProteinID:
CKG81884
LinkDB
All DBs
Position
1:802591..806385
Genome browser
AA seq
1264 aa
AA seq
DB search
MPDKSVPAAQPPMLAGLLKVAATDPKIKGLLQHVGEPHLHITGIDQARPWAIAALAHRAP
VLVVTATGREAEDLSAELRAMLGEKVTWFPAWETLPHERLSPGADIAGQRARILSHIADY
SVVVTAARGFSQPIVSQVAGRDPLVLEVDSECSLEEATQQLVFRAYHHVDLVAKRGEFAT
RGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEVFPARELPITQE
IAQRAAELAVKFQGNPTLQELLAKISDSIPSDGMEALIPALVDQPMVTLAELMPENTHIV
VVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADAPVATRGLDLDASSYRSYESLEKTAQ
KHTMPWWTFAPPGMFETSDGDTLPLEFEPGPTPRGDLEQIDQMMALLLAHTRDGGAAAFI
APAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGLVFPKVRKQPGKPAL
PLVVITETDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTERV
IQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDWKN
TKRKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAV
KADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEER
MAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQ
RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGA
QEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVSEARIVVAHGQMSEELLEQ
TVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYA
YFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGF
DLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRK
LAASANDKDLALVVEEMKDRFGPVPHEVRRLLAVSRLRHLARATGLSDIGVQGTRIKLHP
VELTDSKQVRLKRLAPSATYRAAAKAIQVPFPKEGAKVTDKQLRDVELLQWVADFIAEMF
EHDRVSVTGEKLPDKVISVAQPMSPAAARAERVAQRAAARRQARNDDEDYEDRREARRRK
YRMR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgataaatccgtgcctgcggcacaaccaccaatgcttgctggtttgctcaaagtt
gctgccaccgatccaaaaatcaagggactgcttcagcatgtaggcgaaccccatctgcat
atcacaggcatcgatcaggcacggccgtgggcgattgctgcgttggcacaccgcgcccca
gtgcttgtggtgacggctacggggcgtgaggcagaggacttatctgctgagctgcgtgcc
atgttgggggaaaaggtgacgtggtttccggcatgggagacgttgccgcatgaacgcttg
agcccaggtgctgatattgctggtcagcgagcacgtatcttgtcgcatattgcagactat
tcagtggtggtgacggctgcgcgtggcttcagccagccgattgtttcacaggttgctggt
cgagatcctttggtgttggaagttgattccgaatgcagtttggaagaagcaacacagcag
ttggtgtttcgggcttatcaccatgtggatttggtggctaagcgtggtgaatttgcgacg
cgcggcggcattttggatgtgtttcccacaacggctcagcatccagtacgcgtggaattt
tggggcgatgaggtttcagaaatccgtggattccaggttgctgatcagcgtgcgattcct
gattcggatgtgtcgcgggtagaggttttcccagcgagagaactgcctattacccaagaa
attgcgcaacgtgcagctgagctcgctgtgaagtttcaaggaaacccaacgttgcaggag
ctactggctaaaatttctgactctatcccgtcagatggcatggaggccttgatcccagcg
ttggttgatcaacccatggttacccttgctgagcttatgcccgaaaacacccatattgtg
gtggtcggtcccgaaaagattcgtactcgtgtagcagatcttcaagctacggatgccgag
tttttggcggctggttgggaggctgctgctatgggcgctgatgctcccgtggcaacgcgt
ggcctcgatcttgatgccagctcgtatcgctcctatgaatcgctggaaaagacagcacag
aagcacaccatgccatggtggacttttgcgccacctggcatgtttgaaacctcagacggc
gacaccctcccgttggaatttgagccgggacctacgccgcgtggcgatctcgaacagatc
gatcagatgatggctctgctacttgcacatacgcgcgacggcggtgcggcagcctttatt
gctcctgctcaaggcgctattaagcgcatggtggaacgctttaaggaacaaggaatcccc
acgaaggtggcaacacctggctggcagccaaccttgggtgaagtgacactgtatcaggcg
atgagccatgcaggtttggtatttcccaaggtacgaaagcaacctgggaagcctgcattg
ccgctggtggtgatcacagaaactgaccttaccggtaaccgagttggtgacattgctggt
gcgaagcgtcgcccagccaagcgccgccaccgtgtggacccgcttgctttgaaaaccggc
gactatgtggtccatgaaacccatggcatcggtcggttcctcaagatgaccgagcgtgtg
attcagtccggtgatgagacttcgcggcgcgaatacatcgtgttggaatacgcggcgtcg
aaacgcgggcagccagcagatcaactgtatgtgcctatggattccctcgacatgctgagt
aaatatgtcggcggtgaaaaacctaccctttctaaaatgggtggctcggactggaagaac
accaaaaggaaagctcgcgcagcggtgcgagaaatcgctggtgaactagtcgagctgtat
gccaagcggcaatccgcgccggggcatgcgtttgcacctgattccccgtggcagcacgag
atggaagataacttcccctatgtggaaaccgaagatcagatgcttgctattgacgcggtg
aaagcggacatggagaagccttcgccaatggaccgcgtggtggtcggtgacgtaggttat
ggcaaaaccgaagttgctgtgcgtgcggcattcaaggcggtacaagatggtcgtcaagtc
gtggtgcttgttcctacaaccttgctggcccaacagcatttgagcacctttgaagaacgc
atggcaggattccccgtgacgatcaaggggctgagccgttttacctctcctagtgaatca
aaggagatccttaaagggcttgccgacggctccgttgacattgtgatcggtacgcaccgc
ctgctgcaaacaggtgtgcagtggaaaaatctgggccttgtcatcgtggacgaggagcag
cgttttggtgttgaacacaaggaacacatcaaagcattgcgtacccatgtggacgtgctc
acgatgtcggcaactccgatcccgcgcactttggagatgtcgatggcgggtatccgtgag
atgtcgaccattttgaccccgccagaagatcgacacccaattttgacctacgtgggcgcc
caagaagataaacaagtagcggcagccattaggcgtgagctgcttcgtgatggccaagtt
ttctatgtgcataacaaagtctctgacatcgagaaaaaggctcgggaactgcgtgaactc
gtatcggaagcacgcattgtggtggcgcatgggcaaatgagcgaagagttactagagcaa
actgttcagggattctgggatcgtgaatacgatgttctggtctgtaccacgattgttgaa
accggtctcgacatcgcgaacgccaacacgcttatcgtggaaaatgctcaccacatgggt
ctgtcgcagctgcaccagttgcgtgggcgcgtagggcgttcccgcgagcggggttacgct
tacttcttgtatcccaagggtgccacgttgacggaaaactcctatgaccgtcttgctacg
atcgcgcaaaacaacgatcttggtgctggtatggcggtggccatgaaagacttggaaatg
cgcggtgccggcaatgtgttgggcgcgcaacagtctggtcatatcgccggagtgggcttt
gacctgtatgttcgtttggtgggagaagcggtcgaggcataccgtgcgctagcagatggc
aaggttgccgatgccacggagcaggggccgaaggagatccgcatcgatttgcctgtcgac
gcccacatccccgaggactacatcaactcagaacgattgcgccttgaggtctatcgtaaa
cttgccgcctcggccaatgataaggacttggcgcttgtggttgaggaaatgaaagaccgc
ttcggtcccgttccccacgaggtaaggcggctgctggcggtgtcgcgcctgcgtcactta
gcacgcgcgacagggctaagcgatattggtgtgcagggcacacgcatcaagctgcaccca
gtggaattgactgattctaagcaggtgcgtctcaagcgtctggcaccgtctgctacatat
cgcgctgctgctaaggccatccaggtgccatttcctaaagaaggcgcgaaggtaacggac
aaacagcttcgcgatgttgaactattgcagtgggttgctgactttatagcggagatgttt
gaacacgatcgtgtatctgtgacaggggagaagctgccggataaagtgatctcggtggcg
cagcccatgagccctgctgcggcgcgtgcggagcgcgtagcgcaacgggcagcggcgcgc
agacaagcgcgaaatgacgatgaggactacgaagatcgtagagaagcgcgacgtaggaaa
taccgtatgcgttaa
DBGET
integrated database retrieval system
