Corynebacterium diphtheriae NCTC11397: ERS451417_00922
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Entry
ERS451417_00922 CDS
T04861
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdip
Corynebacterium diphtheriae NCTC11397
Pathway
cdip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS451417_00922 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdip03019
]
ERS451417_00922 (deaD)
03009 Ribosome biogenesis [BR:
cdip03009
]
ERS451417_00922 (deaD)
Enzymes [BR:
cdip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ERS451417_00922 (deaD)
Messenger RNA biogenesis [BR:
cdip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ERS451417_00922 (deaD)
Ribosome biogenesis [BR:
cdip03009
]
Prokaryotic type
rRNA helicases
ERS451417_00922 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
CKG85016
LinkDB
All DBs
Position
1:914051..916099
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AA seq
682 aa
AA seq
DB search
MSITDNATSGENELDIKILSESQDNSQVDEGTTINNDVVADVDDSRVANTSEATDSAQKE
ADSAEKDGFEALGLPEAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAA
FALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQL
SGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPE
DKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRI
LEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL
VATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS
IERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLIKSYAEEHDVPLE
DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRDRGSRFE
RNDDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDPSV
IDRLSDTRISGQLIHIEKDNGRPPRRNDDGDRGGYRGGDRFDRDDRRGGRGGRDRGGYRG
GRDRNDRGDRGGYRGGRGGYRD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccagcggcgagaacgagctggacattaagattttgtcg
gaatctcaggataattcgcaggtagacgaaggcaccaccatcaataatgatgtcgttgcc
gatgtagacgactccagggttgcgaacacttctgaggccaccgactccgctcagaaagaa
gcggacagtgcagaaaaagatggattcgaggctctaggtctcccagaagcaatcctgaag
gcagtcgctaaggttggcttcgaaacgccatccccaattcaggcgcagaccattccggtg
ttgatgcaggggcatgacgttatgggcctcgcgcagacgggtacaggtaagacggcagca
ttcgcgttgccaatcttgtcgcgtatcgacgtcaagaagcgccacccacaggcgttgatc
ctcgccccaactcgcgaacttgctttgcaggttgcagactccttccagtccttcgcagat
catttgggcgacatccacgtgctgccaatctatggcggtcaggcttacggcattcagcta
tccggcctgcgccgtggcgcacagatcatcgtgggtactccaggtcgtgtgatcgaccac
ttggagaagggctccctcgacatttccaacctccgcttcctcgttctggacgaggcagac
gagatgcttaacatgggcttccaggaagacgttgagcgcattttggaggacaccccagag
gacaagcaggttgctttgttctctgccaccatgccaaatggtattcgtcgtttgtcccgt
gactacatgaaggatcctcatgagatccaggtgaagtcgcagacccgcaccaacacgaac
atcactcagcgttacctcaacgttgcacaccgcaacaagctcgatgccttgacccgtatc
cttgaggtcaccgagttcgaagccatgatcatgttcgtgcgtaccaagcatgaaactgaa
gaagtcgctgaaaagcttcgcgcacgcggattctccgctgccgctatcaacggcgacatc
gctcaggctcagcgtgagcgcaccgtcgaccagctcaaggacggtcgcctcgacatcctc
gttgctaccgacgttgctgcccgtggcctcgacgttgaacgcatcactcacgtgttcaac
tacgacattccaaacgacacggaatcctacgtccaccgcattggtcgtaccggtcgtgca
ggtcgttctggtgaagcaatcttgttcgtcactccacgtgagcgtcgcatgttgcgttcc
atcgagcgcgccaccaacgcaaagctgatcgaaatggatctgccaaccgttgatgaggtc
aatgagtcccgcaaggcaaagtttgctgactccatcaccgagtctcttgaagacgatcag
gtagcaatcttccgtagcctgattaagtcctacgcggaagagcacgatgttccactagaa
gacatcgccgccgcattggctacccaggcacgcgctggttccgaattcttgatgaaggag
ccaccaccagaaaagcgccgcgagcgtcgtgaccgcgacgatcgtcgtggcggacgcgac
cgcttcgaccgcgatgaccgccgtggcggccgtgaccgtgaccgtggctcccgcttcgag
cgtaacgacgacatgcagctctaccgcctagcagttggtaagcgccagcatgttcgccct
ggtgccatcgttggtgctctggcaaacgaaggtggcctgtccaacaaggacttcggtcgc
atcaacatcttcgttgaccacaccttggtcgagttaccaaagaacatggatccaagcgtg
atcgatcgcctcagcgatacccgtatctccggccaattgatccacatcgaaaaggacaat
ggccgaccaccacgtcgtaacgacgacggtgaccgcggcggataccgtggcggcgaccgc
ttcgaccgtgacgatcgtcgtggtggacgtggcggacgcgaccgcggcggataccgtggc
ggacgtgaccgcaacgaccgtggtgatcgcggtggctaccgaggtggccgcggcggatac
cgcgactaa
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