Corynebacterium diphtheriae NCTC11397: ERS451417_01445
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Entry
ERS451417_01445 CDS
T04861
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdip
Corynebacterium diphtheriae NCTC11397
Brite
KEGG Orthology (KO) [BR:
cdip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdip03019
]
ERS451417_01445
Enzymes [BR:
cdip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ERS451417_01445
Messenger RNA biogenesis [BR:
cdip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ERS451417_01445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_11
ResIII
NACHT
HA2_N
T2SSE
ABC_tran
PhoH
TsaE
AAA_24
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CKG99629
LinkDB
All DBs
Position
1:1435737..1439591
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AA seq
1284 aa
AA seq
DB search
MSQLSGLGLALHRSFERRITKAHSTRALEAIAQDLATALNSIEKRRSSIPVISYPDNLPV
SSQRDEIAAAIQENQVVIIAGETGSGKTTQIPKICLDLGRGITGLIGHTQPRRLAARTVA
ERIADELDQPIGESVGYAIRFDDRVSPSTSIKLMTDGILLAEMQRDRYLNAYDTIIIDEA
HERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFAHHFSDENGTPAPIIEVSGRTY
PVEVLYRPLELEDGTSLIDVDPIDGLISAIKELMSYGDGDILCFFAGESDIRDAMEAIKE
QRWRNVEVTPLFGRLSNQEQHKVFTSHTGRRIVLATNIAETSLTVPGIHFVVDLGTARIS
RYSSRTKVQRLPIEPISQASARQRSGRCGRVADGIAIRLYSEEDFLSRPEFTDPEILRTN
LANVILQMASLRLGHIDDFPFIQAPDTKSIRDGILLLHELGALTTTDTRTDLPRLTTIGT
TLARIPLDPRLGRMLIEAERLGCLAHVMVVVAALSIQDVRERPLDYQAQADQLHARFKDP
QSDFSSYLKLWAYINQRRDELSGNAFKKVMQQEFLHYMRIREWFDLVRQLKSIGEQVGWK
SFERSDATDNDCIHQALLAGLLSHIGIKEGDSREFVGARNTRFMVFPGSSLAKKPPQFVM
AGELVETSRLWARDVAAIDPRWVEPLAQNLLKHQYSEPHWSLKRGAAMVYQRSTLYGVPI
VVDRLINLATIDAIGAREIFIREALINGQWTTHHSFFKNNMQKLEAANTLEEKARRRDIV
VTEDTLYEFYNDRLPQSVVSTRAFDHWWKKTRTQTPDLLDFDPDKLISDSAEEVNAERYP
DSWYDNGVELELRYRFEPGHPDDGVTVNVPVPYLASLEESGFEWLVPGFIQELLTASLKT
LPKHLRKKIVPAPNYANLIQPRISFRKGPLTQAITNALKDAGITGIEAEDFDLSALPDHL
RITFAAIDKHGKVIDKDKNLARLKTRQKNKIRASALKIGKAVHQSAVTTWTSSTLGKIPE
EVSTKVDGQLIKTYPALVIGEQGFSVEAKPTRAEADASMLTATLAMLMKASNINTQKMLN
GLPLQQRVAVENYPHGSSNGLVQDVKAAVIRDLLIERGGPVRSPEEFDVLKKEITPKVPG
LTRQAVVQLAPSINCYLKTRDEVAHWEGDAIDDISRQLDFLLPPFAVSHHGIRHLARLPR
LCEAITIRLDSMSRDSYKDAELQLVINRLENALYAKANRGGIPKSKINDIAWKIQELRVS
LFAQRLGTAEKVSERKIHKLIEAL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaattatcaggtttgggacttgccctccaccggtcttttgagcgccgtatcact
aaagcgcacagcacgagggctttagaagctattgcacaggacctcgcaacagcgcttaac
tcaattgaaaaacgacgcagcagtatcccagttatctcctatccggacaatctcccagtt
agttcacaacgggacgaaatcgctgccgctatccaagaaaaccaagttgtcatcatcgct
ggcgaaacaggttccggtaaaactactcagattcctaaaatatgtcttgatttgggacgt
ggaattactggcttaattgggcacacgcagccacgtcgattagccgcacgaacggttgcc
gaacgtattgcagacgaattagatcagccaatcggtgaatctgttggttacgcgattcgc
ttcgacgatcgtgtctcccccagtacgtctatcaagctcatgacagacggtattttactg
gcagaaatgcaacgtgatcgttacctcaatgcttacgacacaatcatcattgacgaggca
cacgagcgaagcctgaatatcgatttcatccttggatatctcaaacagctacttcctaag
cgtccagatctaaaagtcatcatcacatcggcaaccattgatcctgaacgattcgcgcac
catttttcggacgaaaatggtacaccagcccccattattgaagtgtctgggcgaacctac
ccagtggaggtactttatcgccccctcgagcttgaagatggtacgtcgcttatcgacgtc
gaccccatcgacggcctaatcagcgccattaaggagcttatgagctacggtgacggtgac
atcctctgtttctttgccggcgaatcagatattcgtgacgccatggaagctataaaagag
caacgatggcgtaatgttgaagtcacaccgctatttggtcgactgtctaaccaagaacaa
cataaagtgtttacatcacatactggccgccgaattgttcttgcaacaaatattgctgaa
acatcactgactgtccccggtattcactttgttgtcgatctaggtacagcacgcatatct
cggtattccagtcgtacaaaagtacaacgattacccatcgaaccgatttcccaagccagc
gctcgtcaacgttccggccgctgtggacgtgtcgccgatggcattgcgattcggttgtac
tccgaagaggactttctctcacgccctgaattcaccgatccagaaattctgagaacgaat
ttggccaacgtgattctgcagatggcctcactacgcctaggccatatcgacgatttcccc
ttcatccaagcgcccgataccaagtcgatccgtgacggaatactgttgttgcacgaactt
ggtgcattaaccacaacggatacgcggactgatcttccacggttaacaacaatcggcacg
acacttgccagaattccgctcgatccacgactaggcagaatgctcatcgaagcagaacgt
ctaggctgcctcgcccatgtcatggtggtagtagctgcgctgtcgattcaagacgtgcgc
gagcggcctcttgactatcaggcgcaagcagatcaactccacgctcgattcaaagatcct
caaagcgacttttccagctatctcaaattatgggcgtacatcaatcagcgtcgcgatgaa
ttgtcaggaaacgcatttaaaaaggtgatgcaacaagagttccttcactatatgcggatt
cgtgaatggtttgatctcgttcgccaactaaaatccataggtgaacaagtcggctggaaa
tcgtttgaacggtcggacgcaaccgacaacgattgcattcaccaagctctcttagcgggg
cttttgtcccatatcggcatcaaagaaggcgattcccgagaatttgtaggcgcccgcaat
acgcgttttatggtcttccctggttcaagtcttgcgaagaaacctccacaattcgttatg
gctggagagcttgtcgaaacgtcaagactgtgggcacgcgacgtcgccgcaatagatcca
cgttgggtcgagcctctggcacaaaacttgctcaaacaccaatattcggagccacattgg
tctctcaaacgtggtgcagcgatggtttaccagcgttcaacgctctatggagtgccgatc
gttgtcgaccgactgatcaatctagctaccatcgatgccattggcgcacgcgagatcttc
atccgtgaagctttaattaatgggcaatggactacccatcacagctttttcaaaaacaat
atgcagaaactagaagctgcaaataccttggaggaaaaagcaaggcgacgcgatatcgta
gtaaccgaagataccctgtacgagttttacaatgatcggctcccacaatctgtcgtttcc
acccgagcgtttgatcattggtggaagaaaacccgcacacagacacctgatttactcgat
tttgatcctgacaaacttatttctgatagcgctgaagaagttaatgcagaacggtatcca
gatagttggtacgacaacggtgtagagctagaactccgttatcgttttgaacctggccat
cctgacgacggagttacagtcaacgttccagttccatatcttgcgtcacttgaggaaagt
ggtttcgaatggcttgttcccggttttatccaagagctgctgactgcttctttaaaaaca
cttccaaaacatctacgaaaaaaaattgttcctgctccgaactatgcgaatctgattcag
ccacggatttcgttccgaaaaggaccgcttactcaggctataacgaatgcgctcaaagac
gccggaattacggggatcgaagcagaggactttgatttatcagcgcttccagatcattta
cggattacattcgcagcaatagacaaacatggaaaggtaatcgacaaagataagaacctt
gcgcgtcttaaaacacgtcaaaaaaataaaattcgtgcgtctgctctcaaaatcggaaaa
gcagtccaccaaagcgccgtcacaacttggacatcctcaactctaggaaagattcctgaa
gaagtttccacaaaagtagacggccaactcataaagacttatcccgccttagtaatagga
gaacaaggattctcagtcgaggccaaacctacccgcgccgaagctgacgcgtccatgctg
acggcaacgttagcgatgctgatgaaggcatcaaatattaacacccaaaaaatgcttaat
gggttgcctcttcaacaacgtgttgcagttgagaactatccccacggcagcagcaatgga
ttagtacaagatgtcaaagctgcggtgatccgggacctactcatcgaacgcggcggacca
gtacgttcaccagaagaatttgatgttcttaaaaaggaaattacccccaaagtgccgggg
ctgacgcgtcaagcggtcgtgcaattagccccttctatcaattgttatctcaaaactaga
gacgaagttgcgcactgggaaggtgacgccattgatgatattagtaggcaattagatttc
ctgctccccccatttgcagtatcacatcatggaattcgtcatctcgcgcgattaccgcgg
ctttgtgaagctataaccattcggctggattcaatgagccgagattcttataaggatgcg
gagctacaactggttattaatagactcgaaaatgccctctatgcgaaggccaatcgtggt
ggaattccaaaatcgaaaatcaacgatattgcgtggaaaattcaagagttacgggttagt
ctttttgcccagagactaggtactgcagaaaaagtatcggaacgaaagatccataagctc
attgaagctctttaa
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integrated database retrieval system
