Corynebacterium diphtheriae NCTC11397: ERS451417_01798
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Entry
ERS451417_01798 CDS
T04861
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdip
Corynebacterium diphtheriae NCTC11397
Pathway
cdip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS451417_01798 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdip03019
]
ERS451417_01798 (rne)
03009 Ribosome biogenesis [BR:
cdip03009
]
ERS451417_01798 (rne)
Enzymes [BR:
cdip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ERS451417_01798 (rne)
Messenger RNA biogenesis [BR:
cdip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERS451417_01798 (rne)
Ribosome biogenesis [BR:
cdip03009
]
Prokaryotic type
rRNA processing factors
ERS451417_01798 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Fy-3
Motif
Other DBs
NCBI-ProteinID:
CKH08933
LinkDB
All DBs
Position
1:complement(1802113..1805013)
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AA seq
966 aa
AA seq
DB search
MAEKSKKTTKNQAVSSPIGQAIAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRHRVEKNVENEIAQIEAKVNRDLEEAAANE
HRVVDSEEEKLRYRVEKNVDNEVEQIKRQVERELSQRSVEVEDLHEVIEFEKEAEPLEDV
EPESAPAPASVSYSVPLFIAPTVVDKELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSAEIVETEDADEHESEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEA
EFLARRESVTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRV
QNVLPSMEAAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPI
GHKGARLTTQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTA
AENVSAEAIGADVKRLHKLWDKIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDF
TSLVIDGDRAWNTVHAYVQSVAPDLLDRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKV
WLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGM
IVVDFIDMVLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFAT
ECPHCEGRGVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAVAMHEEKKKV
SIEDLVAAVVIEDDPQPEPEVAPAPADDDVMNIVSAALDRAYEEDPDEPSGSDYLPLEEK
PQTYAEAVEEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPEVVVEKVSSRGRRRAVRRT
VVEATPEVVAPTETVESSRGRRRAVRKKMSAQPVQTEPVVEDKHEVSASSQGGRGRRRAS
RRAPRR
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gcgatagctgcattggatcgctcgattatcggcgaaaaaatccgtgtgcacattctggcc
aagcagctaggtgttgcatctaaagagctcatcgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaagctaatcagctgctcgactctttcgtt
ccagcgcaaccggaagtagatgagaagttgcgccaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacttggaagaagcggcggcgaacgag
catcgtgtagtggattctgaggaagagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcggcaggttgagcgcgaactaagtcagcgttcggtggag
gtagaggacctccacgaggttatcgagttcgaaaaagaagcggagccgctcgaggacgtt
gagccggaatctgcacctgcgccggcgagcgtgtcctatagcgttccgctgtttatcgcg
cccacggtcgttgataaagagctcgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggtcgtcgtggcgctggtcgt
ggcaagggtgcagatgactcagctgagattgttgaaacagaagatgctgacgagcacgaa
tccgaagaaatcaccgagccagtaggtattaaaggctccactcgtttggaagcacagcgt
cgtcgccgcgcggagctgcgtgaagagtcgaaaaagaagcgccacatcgtttctgaggcc
gagttcctagcacgtcgcgaatctgtcacgcgcacgatggtggtacgtgagcgcgatcgt
gtagaccaccatggcatggtgacccaagttggtgtgcttgaagatggaatgctcgttgag
cactttgttaccagtgaggcccaggcctcgatgatcggcaacatctatcttggtcgcgtg
caaaacgtcctgcccagcatggaagctgccttcatcgacatcggaaagggtcgcaacggt
gtgctttacgcgggcgaggtggactggcgtgccgcaggccttggtgggcgaggccgtcgt
atcgagcaagccctgaaatccggtgaccaggtgctcgtccaagttgctaaagatcctatt
ggacacaagggtgctcgccttactacgcagatttctttcgcgggacgctacttggtgtac
gttcctggtggacgcactgcagggatttcccgcaagcttccagctcctgagcgtaagcgt
ttgaaggaaatcctcaaggaggtcgtgcctcacgacggcggtgccatcatccgaactgcc
gccgaaaacgtttctgcagaggcgatcggtgcagacgtcaaacgcttgcacaagctctgg
gataagatccagcagcgcaccgaggaagaaaaagcttccaagggtgccaagccggtgacc
atgtatgaagagcccaacatgctcgtcaaagtggtgcgtgatctcttcaatgaagatttc
acctccttggttatcgatggtgatcgtgcatggaacacggttcacgcgtatgtgcagtcg
gttgccccagacttgttggatcgcttggtgcgttttgaccgcagcgagcatgagggacgt
gacgccttcgaggtgcaccgcgtcaacgagcagattaaaaaggcactgtcacgaaaggtt
tggctgccatctggtggcaccttggtgatcgaccgcaccgaagccatgacggtgatcgac
gtgaacacaggcaagttcaccggtgcgggcggaaacctcgaagagaccgtgaccaagaac
aacctggaggccgcagaagagatcgttcgccagatgcgtctgcgcgacctcggcggcatg
atcgtggttgatttcattgacatggttttgccggaaaatcaggacttggtgctgcgtcgc
ctcaccgaagcgctaggacgcgaccggacgcgccaccaagtatccgaggtgacgtcgtta
ggcctcgtccagatgacccgcaaacgcttgggcactgggttgcttgaaacgtttgctacc
gaatgcccacactgtgaaggccgtggtgtaatcatccacgacgatcccgtcgagcagcgc
gatgccgatgtggcaatggaaaagtctcatcgtgctcgcaatgaacgcaagaagaacaag
aaccacaccccatccgagcatccggcggccgttgccatgcacgaggaaaagaagaaggtc
agtatcgaagacctcgtcgccgcagtggtaattgaggacgatccacagccagagcctgaa
gtggcaccagctcctgccgacgacgacgtgatgaacatcgttagcgctgcgctggatcgt
gcttatgaggaggatcctgacgagccttccggatcggactatttgccgctagaagaaaag
ccacagacttatgccgaggcagtggaagagtttgagcgttctccacgccgtaagcgtaag
acccgtggcaattccgtctccgatgtgccgccgcgcaaggcagattttgaaaagccagaa
cctgaggttgtcgtggagaaagtaagctcgcgtggtcgtcgtcgagctgtgcgacgcacg
gtagtggaggctacccccgaggtggtagcgccaacggaaactgttgaatcctcccgtggt
cgccgtcgcgctgtgcgtaagaaaatgtctgctcagccagtgcaaacggagccggtagtg
gaagacaagcatgaggtttctgcatcatctcagggtggtcggggacgccgtcgtgcttca
cgacgcgcaccgcgccgttaa
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