Cuniculiplasma divulgatum: CPM_0284
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Entry
CPM_0284 CDS
T04682
Name
(GenBank) nucleotide excision repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cdiv
Cuniculiplasma divulgatum
Pathway
cdiv03022
Basal transcription factors
cdiv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdiv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CPM_0284
09124 Replication and repair
03420 Nucleotide excision repair
CPM_0284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdiv03021
]
CPM_0284
03036 Chromosome and associated proteins [BR:
cdiv03036
]
CPM_0284
03400 DNA repair and recombination proteins [BR:
cdiv03400
]
CPM_0284
Enzymes [BR:
cdiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CPM_0284
Transcription machinery [BR:
cdiv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CPM_0284
Chromosome and associated proteins [BR:
cdiv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CPM_0284
DNA repair and recombination proteins [BR:
cdiv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CPM_0284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SWI2_SNF2
PhoH
ATPase
AAA_22
AAA_30
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
SJK84170
UniProt:
A0A1N5SQK0
LinkDB
All DBs
Position
I:277269..279161
Genome browser
AA seq
630 aa
AA seq
DB search
MNESNGESFAKSSYGSISLKPYQIDAINFAVECLLKQVVPIIESPTGSGKTIISIISSII
YAKKTGKKVLYLTRTNSQQEQILKELKILSKAMDFRAIAMQGRVNMCPLYMELEKESDFT
TESLSKMCSSRKKRTKERKEGGCYYYNSGISSDETREYILENIQSPEDIFETLRSRKICP
YESLKFAMRDADLVVMPYSYFVNSNMAITTIYNWRTSRENLVIIIDEAHNLPDIARESNS
LEISMNTVNISEKEAVDFGDPELQPSVHVSDFMEAIRVSMIELTREMVEKQKEKRIMFRD
IYEEMSIYMKRKSDEIEYMVDALIAFGSQIEDQKENLGKVPMSHIKILGEKLKFLRFAEY
DRFICIVSRDEEEKLEAYCLDPSIVLEPLFRSSTIHVSATLDPVWLYTNMTGIVNFEFKS
IKNIFPASNLLVLYRDDLTTKYSEFGAEMADKYVKVISDIVTGLDRKSMVFFPSFNTMQY
IETKVKFPHLSESRSMTQRDFQHLISLYRKENRPLFGVMGGRLSEGINLPGNLLEVEIIA
GIPFPKPTIKQRALSSYYDLLFGSGWQYAFLFPAIIKIRQTMGRVIRSEEDIGVIIILDG
RVQMLEPYINARLSNNIRDDINSFFSSHIK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgaatctaatggtgaaagtttcgcaaaatccagttatggatctatcagccttaaa
ccatatcagattgatgcaataaatttcgctgttgaatgcctgttgaaacaggttgtaccc
ataatcgaatctccaacagggtcaggaaaaacaataatatcaattatttcctcaattata
tacgcaaagaaaacaggtaaaaaggtactttaccttacgaggacaaattctcagcaagaa
cagattctgaaagaacttaagattctttccaaagcaatggatttcagagcaattgcaatg
cagggaagggtaaatatgtgcccgctttacatggaacttgaaaaagaatcagacttcaca
acagaatctttatcgaaaatgtgttcatcaagaaagaagagaaccaaggaaaggaaggag
ggcggatgctactattacaacagtggtatctcttcagatgaaactagggaatatattctt
gaaaatatccaatcaccagaggacattttcgaaacactaagatcaaggaaaatatgtcca
tatgaatctctaaaatttgcaatgagagatgcagaccttgttgtaatgccttactcatat
tttgtaaattcaaatatggcaattacaaccatctataactggagaacttcgagagaaaac
cttgttataataattgatgaagctcataaccttcctgatatagcacgagaatcgaactca
ctggaaatatccatgaatactgtaaacatctcagagaaggaggcggtcgacttcggagac
ccagaacttcagccttctgtacatgtatctgatttcatggaggcgatacgggtatccatg
attgaattgacccgtgaaatggttgaaaaacagaaggaaaagcggatcatgttcagggat
atatatgaggaaatgagtatctacatgaagcgaaaatcggacgagatagaatacatggtt
gatgctctcatagcatttggatctcaaatagaagatcagaaggaaaatcttggaaaggtt
cccatgtcgcacattaaaattcttggagagaagctgaagttcctcagatttgctgagtat
gacagattcatatgtatagtctcaagggatgaagaggaaaagcttgaggcatactgtctg
gatccatcaattgttcttgaaccactgttccggtcttccaccattcacgtctctgcaact
cttgatcctgtgtggctttacaccaacatgactgggatagtaaattttgaatttaaatcc
attaaaaatatattccctgcatcaaatctactggttctctacagggatgatcttacaaca
aaatattcagaattcggagccgagatggctgataaatatgttaaggtgataagtgatatc
gtaacaggtcttgaccggaagtcaatggtattcttcccctcatttaatactatgcagtat
atagaaacaaaggtaaaatttccccacctgtcagaatcaagatccatgacacagcgtgat
tttcaacatcttatatctctttacagaaaggaaaatcgaccattgtttggtgttatgggt
ggaagattatccgaaggaataaatctaccgggaaatcttctcgaagttgaaataatagca
ggcattccattcccgaaacccacaataaaacagagggctctatcttcatattacgatctg
ttattcgggtcaggatggcagtatgcttttctatttccagcaattattaagataaggcaa
acaatgggcagggtaataagatctgaagaggatattggagtgataataattttagatgga
agggtccaaatgctggagccatacataaatgcaaggttaagtaacaatatcagagatgat
atcaattcctttttcagtagtcacattaaataa
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