Cuniculiplasma divulgatum: CPM_0330
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Entry
CPM_0330 CDS
T04682
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
cdiv
Cuniculiplasma divulgatum
Pathway
cdiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPM_0330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdiv03019
]
CPM_0330
Messenger RNA biogenesis [BR:
cdiv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CPM_0330
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CPM_0330
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP4
KH_1
RRP40_S1
KH_PNO1_2nd
KH_6
KH_2
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
SJK84215
UniProt:
A0A1R4A5H4
LinkDB
All DBs
Position
I:326449..327123
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AA seq
224 aa
AA seq
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MFPGDDIDPGNLKPRNGVHRRADGKLTSQYFGVIQKGEEYIDIVPFNGSYFPRRGDKVIG
KIMEVGPSMWTVDIKSPYMTMLHMNDTPWRTISGDLKKFLTTGDYVYAKVMNVNEIKESW
ITLKEPGIGLRKLEGGHIMAIPAPKVPRIIGKNGSMVNMVKDATFTRIVIGQNGLIWIDG
LPENVIVASEAIALIESEAHATGLTDRITEFLKSKKGEINGNTQ
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
gtgtttccaggagatgatattgatccaggaaaccttaaaccaagaaatggcgtgcacaga
cgtgctgacgggaagttaacttcacagtattttggagtgattcagaaaggagaggagtat
atagacatagtaccgtttaatggcagctatttcccaaggcgtggtgacaaggtaatagga
aagataatggaagtaggtccatcaatgtggacagtggacataaaatcgccttacatgaca
atgcttcacatgaatgatacaccttggagaaccatatctggagacctgaagaaattccta
acaactggtgactatgtgtatgccaaggtaatgaatgtaaacgaaataaaggaaagctgg
attacgctgaaggaacctggaattggattaagaaagctggaaggaggccacataatggca
attccagctccaaaggtaccaagaatcataggaaagaacggttctatggtcaatatggtc
aaggatgcaacattcacaaggattgtcataggacagaatgggctcatttggatagatgga
ctcccagaaaatgtgattgtcgcttcagaggcaatagccctaatagaaagtgaggcacac
gcaacaggacttactgacagaattacggaatttttgaaaagtaaaaaaggtgaaataaat
gggaacacccagtga
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