Cuniculiplasma divulgatum: CPM_1492
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Entry
CPM_1492 CDS
T04682
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdiv
Cuniculiplasma divulgatum
Pathway
cdiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPM_1492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdiv03019
]
CPM_1492
03009 Ribosome biogenesis [BR:
cdiv03009
]
CPM_1492
Enzymes [BR:
cdiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPM_1492
Messenger RNA biogenesis [BR:
cdiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPM_1492
Ribosome biogenesis [BR:
cdiv03009
]
Prokaryotic type
rRNA helicases
CPM_1492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
PRAI
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
SJK85286
UniProt:
A0A1R4A8L8
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All DBs
Position
I:1438920..1440191
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AA seq
423 aa
AA seq
DB search
MNTFEELELKKPLLESLKKINFIEPTEIQAMTIPVALNDKSIMVKSKTGSGKTAAYLIPL
IQLTEPKGKLMNLVLVPTRELAIQVFGVFKSLGSGCKLKGALVYGGASISRQAEEIRNRP
EFIIGTPGRIKDMRDRGYLNLSSIERVVLDEADLMLDMGFYDDVEDIISSTKKDRRMFLF
SATMTGDVKGLASKFMKESEYINGEDEDVTPSSIKHDYIVSENHDKVDFLVRYIKDYNPE
KAIIFSNTKHGASFLSDKLRREGFKAVQIHGDLSQKQREDSIAKFRKRERFLVATDVAAR
GVDIPEITHIINYDLPREDKTYIHRVGRTARFGKDGTAMSIILPDEMYLINRIKRTAGVE
ISKLPMEGQAEEAKPRRDQRRRPSYGYGSQGKRNSGRRYDSGNNKHQSTRRRESTSRRRP
RRD
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgtttgaagagttagaattgaaaaaacctttgcttgaatcattaaagaagata
aattttattgaaccaactgaaattcaggcaatgacaataccggttgccctgaatgataaa
tccatcatggtaaaatccaaaactggaagtggaaaaacagcagcttatctgatacctttg
atacagctcactgaaccaaagggaaaactgatgaatctagtactggttccaacaagggaa
cttgccatccaggtctttggagtgtttaaatctctgggatcaggatgtaaattaaaagga
gccttagtttatggaggagcatcaatatcaagacaggcggaagaaatcaggaacaggcca
gaatttataattggtactcctggaagaatcaaagatatgagagatagaggatacctgaac
ctctctagtattgaaagagtagtactagatgaggctgatctaatgctggatatggggttc
tatgatgatgttgaggatataataagctcaacgaagaaagacagaagaatgttcctattt
tccgcaacgatgactggagacgtaaagggtctagcatcaaagttcatgaaggaatcagaa
tacataaatggagaggacgaggatgttaccccgtcttccataaaacatgactatattgtt
tcagaaaaccatgacaaagtggattttcttgtaagatatataaaggattacaacccggaa
aaggcgatcatattttccaacaccaaacatggtgcgtcatttttgagcgataagctaagg
agagaaggttttaaggctgttcagatccatggtgatctatcacagaaacaaagggaggat
tccatagctaaattcagaaagagggaaagatttttggttgcaaccgatgttgctgcaagg
ggagttgacattcctgagattacacacatcataaattatgatctaccaagagaagataaa
acatatatacacagagttgggaggactgcaagatttggcaaagacggcaccgcaatgagt
ataatactgccagatgaaatgtacctaataaacagaataaagagaacagcaggcgtcgaa
atatcaaaactgcccatggagggacaggcagaagaggcaaagccaagacgtgaccagaga
agaaggccatcctacgggtacggcagtcaggggaagagaaatagtggtagaagatatgac
tcgggaaataacaaacaccagagtacgagaaggagagagagcacatcaagaagaagaccc
agaagagactga
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