Celerinatantimonas diazotrophica: CEDIAZO_00696
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Entry
CEDIAZO_00696 CDS
T07531
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
cdiz
Celerinatantimonas diazotrophica
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdiz03019
]
CEDIAZO_00696 (csrD)
Messenger RNA biogenesis [BR:
cdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CEDIAZO_00696 (csrD)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GGDEF_GdpP
DUF2621
Motif
Other DBs
NCBI-ProteinID:
CAG9295576
LinkDB
All DBs
Position
CEDIAZO_genome:735138..737042
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AA seq
634 aa
AA seq
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MKLSNKFILFIVICVVTAVGLVGIGGALTFRKLAYDQQSFKIKAIVQLLDSQLDVQPDTP
EFEQWLPNWLHAHQIIRMDVSNKGGTVYTFRDVRYHGNTNLLIHYHFQLKSHPNFSITLW
VESPFKRLRYAPDAMVYVFLGVIIVAVGLLISIQWLKNAFKGAERLEWRGRRIIGGHQDG
VMNAEPGEWPRSASRAINQLLLQLENSRQDRARFDRMIRENAFIDELTGLANLTHFSNRL
ETEMLDGDANIGAVLLFQITILDEFNYIHSQEAGDVLLQQFAQLLNNYAKNNTNAIVGRV
GGDQFALLLAQVTLAQAESVSLALLKQLERIPLPSGFYSDDYIAVGIAGYQFGDSPQEVM
HQAEDALRVAKQQGGNAWFTVDRQLTATYIGQGSVRWRAMLEEALSLGKVCYFEQLIYAR
NRIPYSVELLARIQDSDSTWLTASVFWPWVERCGMVKQFDYLAIENALERLKTSTISVNI
NLDVETLQEKAVIRRLIYWAMETNPRQAGRLIIELKEQQVAFLGRRQQARINALREKGIL
IAIDRAGQNVLSTQYINDLQPAYIKLHPSLVRDLARRQVNRLAISSLLASAEGKAKVVAV
GVESDRDWQVLERLGVNAGQGNWFSPVIAPEKED
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactgtcgaataaatttattctgtttattgttatttgtgtggtgactgccgttggt
ttggtagggattggtggtgccttgacattccgtaaactcgcctatgatcaacaatcgttt
aaaatcaaagcgattgtgcagcttctcgatagtcaattggatgttcagcctgatactccg
gagtttgaacagtggttacccaattggttacatgcccaccaaattattcggatggatgta
tcgaataagggaggaacagtttatacctttcgtgacgttcgttatcacgggaatactaat
ttactgattcattatcatttccagctgaaatcccatcccaatttttctattacgttatgg
gtcgagagtccatttaaaaggctgcgttatgcgccggatgcaatggtgtatgtcttctta
ggggtgattattgtggcggtcgggttgctaattagtattcagtggctcaaaaatgcgttt
aagggggctgagcgccttgagtggcgaggaaggcgaattattggtggtcatcaagatggc
gtgatgaatgcggagcctggcgaatggcctcgaagtgccagccgggcgattaaccagttg
ctcttgcagctggaaaatagtcgccaggatcgggcccgatttgaccgaatgatccgcgag
aatgcttttatcgatgagttgaccgggctggcgaacctcacgcatttcagtaatcgtctt
gaaacagagatgctcgatggggatgccaacatcggagccgttttgctttttcagattacg
attttggatgaatttaactacatccattcgcaagaggctggtgatgttttactccagcag
tttgcgcagttgctgaacaattatgcgaaaaataataccaatgcgattgtggggcgggtt
ggtggcgaccagtttgcattactgttagctcaggtgactttggcacaagccgaatcggtg
tcgctggcattgttaaaacagttagagcggatcccgctgccttcaggattttacagtgat
gattatattgctgttggcattgctggatatcagtttggcgattctccacaagaggtgatg
catcaggctgaagacgcactgcgtgttgccaaacagcaaggcggaaatgcttggtttacg
gtcgaccggcaattgacagctacctatattgggcaaggttcagtgcgttggcgggcgatg
ttagaagaagctctttcattaggcaaagtatgttatttcgagcagttaatttatgctcga
aatcgaattccctattcggtggaattactggctaggatccaagattcagattcgacttgg
ttgacggctagtgtgttttggccctgggtggaacgctgtggcatggtcaaacaatttgat
tatctggctatcgagaatgccttggaacgattaaaaacgagtactatctctgtaaatatc
aacttagatgtcgaaacgcttcaagaaaaagcggtgatcagacgactcatttattgggcg
atggaaaccaatccgcgccaggctgggcggttaatcatcgagcttaaagaacagcaagtt
gcttttttggggcgtcgtcaacaggctcgcattaatgcattacgtgaaaaaggaattctg
atcgctattgaccgtgctgggcaaaatgtgctcagcactcagtatatcaatgatcttcaa
cccgcttatattaagcttcatccgagtcttgttagagatctggccagacggcaggtgaat
cgcttagcaattagcagtttgttggccagtgctgaaggcaaagccaaagttgttgctgtc
ggggtcgaatcggatcgagactggcaagtcctagagcgcttgggggtgaatgctggccag
gggaattggttttccccagtgatagcccccgaaaaagaggattaa
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