Celerinatantimonas diazotrophica: CEDIAZO_01663
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Entry
CEDIAZO_01663 CDS
T07531
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEDIAZO_01663 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdiz03019
]
CEDIAZO_01663 (rhlE)
Enzymes [BR:
cdiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEDIAZO_01663 (rhlE)
Messenger RNA biogenesis [BR:
cdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEDIAZO_01663 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
SNF2-rel_dom
Utp25_C
SWI2_SNF2
WhiA_N
UPF0228
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CAG9296512
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All DBs
Position
CEDIAZO_genome:complement(1777985..1779247)
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AA seq
420 aa
AA seq
DB search
MSFAELGLSKPITESLNALGYSKPTPIQAQSVPVILKGKDVLAAAQTGTGKTAAFVLPLL
ERLRQQKPSQTKEVKVLIVTPTRELAAQIDTNIDAYAKNLRIRHQVIFGGVSAKSQIRQL
IPGCELLTATPGRLLDMCSQGMLDLSKVQTLVLDEADRMLDMGFIHDIRRLLKLLPKKRQ
NLLFSATFAGAIRQLAQSLLDHPIEITVDRENQTARKVEQYYTLVDKNDKTGLLKQLVTE
NKWQQVLVFTRTKHGANRLTQRLERANINAAAIHGNKSQNARVSALNGFKDGRIEVLVAT
DIAARGLDIKQLPQIVNFDLPNIPEDYVHRIGRTGRAGQSGTAYSLVSEEQLLLLNDIEK
FIKSPIHELSVDGFNASFNRQSAQLAQKTPKTPKTPTSQRHGAPSRNRPRKNASSKSSSR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgccgaactaggcttatctaaacccattaccgaatccttaaatgcgctcggt
tattccaagccaacccctattcaagcccaatcggttccagtgattctcaaaggcaaagat
gtattggcagcagcacaaacaggcacaggtaaaacagctgcatttgtattaccgctactt
gagcggttacgtcagcaaaagccatcacaaactaaagaagttaaggtacttattgttacc
ccgactcgagaattagccgctcaaattgataccaatatcgatgcttatgccaaaaattta
cgcatccgtcaccaagtgatctttgggggagtcagtgctaaaagtcaaatccgccagtta
attcctggctgtgaactattgacagcaacaccgggtcgattactggacatgtgctcgcaa
ggaatgttagatctatctaaagtgcagacactggtacttgatgaagcagaccgaatgttg
gatatgggatttattcacgatattcgtcgtctgttgaaactactgcccaaaaaacgtcaa
aatttacttttttcagcaacctttgcaggtgcaattcgccaactagcgcaatcacttctg
gatcatcctattgaaattaccgtggatcgtgagaatcagaccgctcgtaaagttgaacaa
tattacaccttagttgataaaaacgataaaacagggttacttaaacaattagtaactgaa
aacaaatggcaacaagttttagtgtttactcgcaccaaacatggcgccaaccgtctaacc
caacgtctagaacgggcgaatataaatgcggcagccattcatggtaataaaagccagaat
gctcgagtcagtgcgctcaacgggtttaaagatggtcgtattgaagtccttgttgcaact
gatatcgccgcgcgtgggcttgatatcaaacaactcccacaaattgtcaattttgatttg
ccaaacattcctgaagattatgtccaccggataggtcgcaccgggcgagcaggacaatca
ggaactgcctattcactggtcagtgaagaacaactattgctcttaaacgacattgagaaa
ttcattaaatctcccattcatgaactcagtgttgatggctttaatgcgtcatttaaccgt
caaagcgctcaactggcccaaaaaacgccaaaaacgccaaaaacgccaaccagtcaacga
catggagctccgagtcgcaatcgccctcgtaagaatgcctcatcaaaatcatcatcgaga
taa
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