Celerinatantimonas diazotrophica: CEDIAZO_01905
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Entry
CEDIAZO_01905 CDS
T07531
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEDIAZO_01905 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdiz03019
]
CEDIAZO_01905 (rne)
03009 Ribosome biogenesis [BR:
cdiz03009
]
CEDIAZO_01905 (rne)
Enzymes [BR:
cdiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEDIAZO_01905 (rne)
Messenger RNA biogenesis [BR:
cdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEDIAZO_01905 (rne)
Ribosome biogenesis [BR:
cdiz03009
]
Prokaryotic type
rRNA processing factors
CEDIAZO_01905 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAG9296748
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All DBs
Position
CEDIAZO_genome:2051544..2054498
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AA seq
984 aa
AA seq
DB search
MKRMLINAMQLEEMRVALVDGQKLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEISREYFPEGYVYKGRPSIKDAVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPNAGGISRRIEGDDRTQLKEALNTIKVPKGMGRIVRTAGTGKSAEEL
EWDLKVLLNRWDAIKSVAETHPAPVLIHQESNVIVRAIRDYLRRDVGEILIDNKAIFEEA
KEHISLVRPDFVNRVKRYEGEVPLFNHYQIESQIESAFMREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVKNQREVEN
RFREAVRQDRARIQIGRISRFGLLEMSRQRIRPSLGESSTHICPRCNGQGTIRDTESLAL
SILRLLEEEALKENTNEVRAEVPVSVAAYLLNEKRTSLNKIEKRHQVRIIIIPNQHMATP
HYEVTRVRPVEQTDEPSYSLVTTQPTPVYEPRTHAREQSQEQPVLKGFAPIEPAPVNKAE
SPQTSAPQSWFSRLMKKLLSPTPQVEETKAQDTTPEQQPAPDNKPKTEQSSNSEQLRKTR
ESRNRRQNRSKQTGGANKPKKQDETSQAQSTTNTKKSATTKDEKSAQPQKKQRSPAAKAN
DKKPAETQSQQNKPQANKAVEDVVKPRRQQRRMHRKIRMQEVVKDVEQSKVVTTTETVDT
TMAAENVKQPAVNPEPSKAIESPEVEKVSKQAPAVEQSVELVTTSEEQPVEVSKESTKAD
DDAKETTSSSSNDELQAKPKRRRRRNTQSPYVGERKRFSDLPKADIENNEDAEPEPMQNR
PDTGEDKVTTTENAKTTSSEVEAATTSSAQNANSVAKSETVDAQEASAEKESAQPLEQDN
IEEVKVTSNESVQKKDDSAPVALGLIGTAKGYAFAPMTKPEPAQVVQVTIETQPYERPHF
VHSGRQAGIDGASKWVNAPMQKTM
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgccatgcaacttgaagagatgcgcgtggcactagtagat
ggacaaaaattgtatgatctggatattgaaagtccaggccatgaacagaaaaaggcaaat
atttataaaggtaaaattactaggattgaacctagccttgaagccgcatttgtagactac
ggcgccgaacgacatggtttcttgccaatcaaagagatttctcgcgaatatttccccgaa
ggatatgtctataaaggccggccatcaattaaagatgccgtaaaagaaggccaagaagtc
atcgtgcagattgataaagaggaacgtggtaataaaggtgccgcgttaacaacatttatc
agtctcgcgggaagttatttggtattgatgcccaataatcccaatgcaggtggtatttcc
agacggattgaaggtgatgatcgaacccaacttaaggaagctttaaacacaattaaagtt
cccaaaggtatgggacgaattgttcgaacagccggaactgggaaatcagctgaagagtta
gagtgggatttaaaagtgcttcttaaccgttgggacgcgattaaatctgtcgcagaaacc
caccctgctcccgttcttattcatcaggaaagtaatgttattgtgcgtgcgattcgcgac
tatttacgtcgcgatgtcggtgagatcttgatcgataataaagcgatttttgaagaggca
aaagaacatatctcactcgtacgccctgattttgtcaatcgggttaagcgttatgaaggt
gaagtccccttatttaaccattatcaaattgaatcgcagattgaatctgcatttatgcgc
gaagtccgcctaccgtcaggtgggagtattgttattgatccaacagaagcgctcacttct
atcgatattaactcggcgcgcgccactaaaggtggtgatattgaagaaacagccttacaa
acgaatcttgaagctgccgacgaaattgcacgtcagctacgtttgagagatttaggcggt
ttggttgtgattgactttattgatatgacgccagttaaaaaccaacgggaagtcgaaaat
cggttccgcgaagctgtgcgacaagatcgcgctcgtattcaaattgggcgaatctctcgt
tttggattgctcgaaatgtcacgccagcgaatccgaccttcgttaggtgaatcatcaaca
catatttgccctcgttgtaatggccaaggtacgattcgggataccgagtcattggcgctc
tcaattttacgtttacttgaagaagaagcactcaaagagaatactaatgaggtgcgtgct
gaggttccagtttcagtggcagcctatttattgaatgaaaaacgaacttcgttaaataaa
atagaaaagcgccatcaggttcgaatcattatcattccgaatcaacatatggcaacacct
cattacgaggttactcgagtccgtccagttgagcagaccgatgaacctagttatagcctc
gtgacaacacagccaacgcctgtttatgagccacgcacacatgctcgagaacagagccag
gagcagcctgttttgaaaggttttgcgcctattgaaccagcccctgtaaataaagcagaa
tcgcctcaaacaagcgcaccacagtcatggttttctcgtttgatgaaaaagcttttgtct
cctactccgcaagttgaagaaacgaaagcccaagacactacacctgagcaacagccagcg
ccagataacaagccaaaaactgaacaatcgtctaattcagaacagctacgtaaaactcga
gaaagtcgcaatcgtcggcaaaatcgttcgaaacaaacgggtggcgctaacaaaccgaaa
aagcaggatgaaacttcgcaagcgcaaagcacgacgaatactaaaaagtcagcaacgact
aaagatgaaaaatcggctcagcctcagaagaaacaacgttcacctgcggccaaagccaac
gataaaaaaccagcggaaacgcaatctcagcagaataagccacaagcgaataaagcggta
gaagatgttgtgaaaccccgtcgtcagcagcgacgaatgcatcgaaaaatccgaatgcag
gaggttgtgaaagacgttgagcaatcgaaagttgttacaactactgagactgttgataca
actatggccgctgaaaacgtgaaacaaccagcagttaatcctgagccaagtaaagcgatt
gaatcaccagaagttgaaaaagtatccaaacaagcacccgcagtagaacaatcggtagaa
cttgtgacaacatcagaagaacaacctgttgaggtctcaaaagagtcgactaaagcggat
gatgatgctaaagaaacaacgtcgagttcatctaacgatgagcttcaggctaaacctaaa
cgtcggcgtcgtcgtaatactcagtctccttatgtgggagagcgtaagcgttttagcgat
ttaccaaaagcggatattgaaaataatgaggatgcagaaccggagccaatgcaaaatagg
cctgacaccggtgaagataaagtaacaacgacagaaaatgctaaaacaacatcctctgag
gttgaagctgctacaacttcttctgcgcaaaacgcaaactcagttgcaaaatcggaaaca
gtagacgctcaagaggcttcggctgaaaaagaatctgcacaaccgttagaacaagataat
attgaagaggtaaaagttacatctaatgagtccgtgcagaaaaaagatgacagtgctcct
gtagctctgggattgattggaacagcgaaaggctatgcttttgcaccaatgaccaaacca
gagcctgcgcaagttgtccaagtgaccatcgagactcagccatatgaacggccccatttt
gtgcacagtggtcggcaagcaggcattgatggcgcatctaaatgggtaaatgcaccaatg
cagaagacgatgtga
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