Celerinatantimonas diazotrophica: CEDIAZO_03038
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Entry
CEDIAZO_03038 CDS
T07531
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CEDIAZO_03038 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdiz03021
]
CEDIAZO_03038 (rpoD)
Transcription machinery [BR:
cdiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CEDIAZO_03038 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
DUF3246
TMPIT
Cwf_Cwc_15
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
CAG9297847
LinkDB
All DBs
Position
CEDIAZO_genome:3265622..3267460
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AA seq
612 aa
AA seq
DB search
MEPTPQSQLKVLLAKGKEQGYLTYSQVNDHLPEDIVDSDQVEDIIQMINDMGITVYENAP
DADELMLAENAADEDAVEAAAQALASVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPDTIAMLLDMYDQYQAEELRIGDIVSGFLDESEVEDAAPTATH
IGSELAESDRDDDDDDDDEDSDDDEDSDVGIDPELAKERFTALREVYEQSLATINKNGRD
SKAARESIEALSEVFHTFRLIPKVFDKIVARMRSMMDRVRTQERLIMKMCVEQGKMPKKA
FVNAFAGNESSEAWFDQQLASAKSYAPALKEVEEEVRRSISKLHQVEEETGLTIQSIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPNPD
ELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSLPVDSATNDNLK
FATQEVLAGLTPREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEQLRSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagccaaccccacagtcacaactcaaagtccttttagcaaagggcaaagagcaaggc
tatctcacctactcacaggtgaacgatcatttacctgaagatattgtcgattcagatcag
gttgaagatattattcaaatgatcaacgacatgggtatcacggtctatgaaaatgcgcca
gatgccgatgaattgatgctggcagaaaatgccgccgatgaagatgcagttgaagcagca
gcccaagcactggcctcagttgaatcagaaattggccgtacaaccgaccctgtgcgtatg
tacatgcgcgaaatgggtaccgtggaattgttaacacgtgaaggcgaaattgatatcgcc
aagcggatcgaagatggtattaatcaggttcagtgttcggtcgcagaataccctgatacc
attgccatgttattagatatgtatgaccaataccaggcagaagaactgcgcattggtgat
atcgtatcgggctttctagatgaaagcgaagttgaagatgctgcaccgacagccacacat
attggctcggagctcgctgaaagtgatcgcgatgatgacgacgatgacgatgatgaagac
agcgatgatgatgaagattcagatgtaggaatcgatccagagctggctaaggagcgcttt
acagcgctgcgtgaagtctatgaacaatcactggcaacgatcaacaaaaacggccgcgat
agtaaagcagcccgcgaaagtatcgaagctttaagtgaagtattccataccttccgccta
atcccgaaagtcttcgataaaatcgtcgcacggatgcgttctatgatggatcgcgttcgt
acccaagagcgactcatcatgaagatgtgcgtcgaacaaggcaaaatgcccaaaaaagca
tttgtaaatgcttttgctggcaacgaatcatcagaagcatggtttgaccagcagttggca
tcagctaaatcctacgcaccggcactgaaagaagtcgaagaagaagtacgccgaagcatc
agcaagctgcaccaagttgaagaagaaactggattaaccatccaaagtattaaagacatt
aaccgtcgcatgagcatcggtgaagccaaagctcgccgggcgaaaaaagagatggttgaa
gcaaacttacgtttggttatttcgattgcgaaaaaatataccaaccgtggcttacagttc
cttgatttaattcaggaagggaatattggcctgatgaaagcggttgataaatttgaatac
cgccgcgggtacaaattctcaacctacgcaacttggtggatccgtcaggcaattacacgt
tcgattgccgaccaggctcgaaccattcgtattccggtccatatgattgaaacaatcaac
aaactgaaccggattagccgtcagatgcttcaggaaatgggccgtgagccgaaccctgat
gaactggcagaacggatgatgatgcctgaagataaaattcgtaaggtattgaagatcgcc
aaagaaccaatttcgatggagactccgattggggatgatgaagattcgcacttaggcgac
tttatcgaagacaccaccttgtcgctgcctgttgattcagctaccaacgacaatctgaaa
tttgcaactcaggaagtcttggcaggcctcaccccgcgtgaagcaaaagtattgcggatg
cgttttgggattggcatgaacacggatcacaccctcgaagaagtgggtaaacagtttgat
gtaacccgtgaacgtattcgtcaaatcgaagccaaagcgctgcgtaaactgcgacatcca
agtcgtagtgaacaattgcgcagtttccttgacgaatag
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