Celerinatantimonas diazotrophica: CEDIAZO_03129
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Entry
CEDIAZO_03129 CDS
T07531
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEDIAZO_03129 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdiz03019
]
CEDIAZO_03129 (rnr)
03016 Transfer RNA biogenesis [BR:
cdiz03016
]
CEDIAZO_03129 (rnr)
Enzymes [BR:
cdiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CEDIAZO_03129 (rnr)
Messenger RNA biogenesis [BR:
cdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEDIAZO_03129 (rnr)
Transfer RNA biogenesis [BR:
cdiz03016
]
Prokaryotic type
tRNA degradation factors
CEDIAZO_03129 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
SMC_Nse1
LodA_C
DHU1_N
Motif
Other DBs
NCBI-ProteinID:
CAG9297937
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Position
CEDIAZO_genome:complement(3369146..3371506)
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AA seq
786 aa
AA seq
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MPNDDNHVDIPSELVAFIKQQDAPVSSTFLSHQFSLAEADLNSHLKSLCQQGVLASTRKG
EYTLPERLGLVVGEVIGHRDGYGFLRCADKGNDLFIPASKFGGAMHGDRVLAAPGPVDKK
GRQEARILRVLQPGQQEIVGRFFKERSGSFIVPDDSRFNFDVWVDDSATLGARQGQVVVA
KLIRGSKSDPVVRAQIIEVLGEQMDPGIEVEVALRNYDIPHAWPDDVKKQINSIGEQLSE
QDYQNRVDLRQLPLVTIDGEDARDFDDAVYCERKKSGGWRLWVAIADVSYYVRHGSALDN
EAFERGTSVYFPDQVVPMLPEKLSNGLCSLNPEVDRACLVAEMTISEAGRLSGYKFYPAV
MHSHARLTYNKVAAILAGDELLQERYQAQVAHLKQLHRLYLALKQARAQRGGIELETEEV
RFIFNAQRKIEQIVPLKRNDAHKMIEECMIQANVAAAKFVEKHKAPILFRVHDKPSTERL
NNFRGFLNELGLTLTGGDEAEPKDYFALVEQITEREDKELIQTMLLRSMMQAVYQPDNIG
HFGLALKSYAHFTSPIRRYPDLLLHRVIKYLLAKEQANPKHRWTPNGGYLYKIEEMDNFG
EHSSMAERRADEATRSVSDKLKCEFMLDHVGEIRSGKVAAVTNFGLFIRLDELHIDGLVH
ISNLGRDYFEYDNARQSLIGRASGIRYRIGDSLKVKVASVNMDDSKIDLMLASGENANPS
GKSRRKATKKTSTAEPAKAPEKPKSSKAKKKKVAPKTTEATPKRKKKRKSRPGKKERAKL
KNTSKS
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacgacgacaatcatgtcgatatcccgtctgaattagtcgcttttatcaagcag
caagatgctccagtttcttctacgtttttatctcatcagttttcactggctgaagctgat
ttgaattctcatttaaaatctttatgtcagcaaggggttcttgcttcaactcgtaaaggt
gaatataccctgccagaacgtcttgggttagttgtgggagaggttatcggccatcgggat
ggctatggatttttacgctgcgctgataaaggcaatgatctatttattcctgctagtaag
tttggcggtgcgatgcatggggatcgcgttttagcagctcccggccctgtcgataaaaaa
gggcgtcaggaagctcgcatactgcgagttttacaacctggacagcaagagattgttggg
cgcttttttaaagagcgttcagggtcattcattgtgcctgatgacagccgctttaatttt
gatgtttgggtggatgactcagccactttgggagcacgacaaggtcaggtcgtggtcgcc
aagttaattcgggggagcaaaagcgacccggtggtacgagcccaaattatagaggtgttg
ggggaacagatggaccctggcattgaagttgaagtcgcactgcgtaactatgatattccg
catgcttggcccgatgatgtgaaaaagcagatcaacagtatcggtgagcagctgagtgaa
caggactatcaaaatcgagtcgatttgcgccagttgccgttggtgacgattgatggcgaa
gatgctcgagattttgatgatgcggtgtattgtgaacggaagaaatcgggtggctggcga
ctgtgggttgctatcgccgatgtttcttattatgttcgccacggtagcgcattggataat
gaagcatttgagcgcgggacctctgtctatttccccgatcaagtggtcccgatgttacct
gagaagttatcgaacgggctgtgttcactgaatcctgaggttgaccgggcttgtttggtt
gctgagatgacgatttctgaagcggggcgattgtctggatataaattttatcccgcggtg
atgcactcccatgctcggcttacctacaacaaagttgcggcaattttagccggggatgaa
ctgttgcaagagcgttatcaagcacaggttgctcatcttaaacagttgcatcgactgtat
ctggctctaaaacaagcacgagcgcagcgtggtggcattgaactggaaaccgaagaggtt
cgttttattttcaatgcgcaacgcaaaattgagcagattgtgccgttaaaacgtaatgat
gcgcataagatgatcgaagagtgcatgatccaggcgaacgtcgccgcggcgaagtttgtt
gaaaaacataaagccccgattttatttcgagtgcatgataaacccagtaccgaacggctc
aataactttagaggctttctcaatgagttgggattgaccttaaccggtggtgatgaggcc
gagcctaaggattattttgccctagtagaacagattactgaacgcgaagataaagagctg
attcaaacgatgctactgcgctcgatgatgcaggcggtttatcagccggataacatcggc
cattttggtttggcactgaaaagctatgcgcatttcacctcaccgattcgccgttatcct
gacttgttgttacatcgggtgataaaatatctgttagccaaagagcaggccaatccaaaa
caccgttggacgcccaatggtggctatctgtataaaatcgaagagatggataatttcggc
gaacacagctcaatggcagaacggcgagccgatgaagcgacccgctcggtgagcgataaa
ctgaaatgtgagtttatgcttgaccatgtcggagaaattcgcagtggcaaggtggcagcg
gtgaccaattttgggctcttcatccgtttagatgagctgcacattgatggattggtacat
attagcaatctggggcgtgattattttgaatatgataatgcccgccagagcttgattgga
cgcgccagtggtatccggtatcggattggcgattcgcttaaagtgaaagtcgccagtgtg
aatatggatgatagtaaaattgatttgatgctagcttctggcgaaaatgctaacccatcg
ggtaaaagccgtcgcaaagccactaagaaaacttcgactgctgagccagcaaaagcaccc
gagaagcccaaatcgagtaaagcgaaaaagaaaaaggttgcaccgaaaaccactgaagca
acacctaaacgcaagaaaaaacgtaaaagccggcctggtaaaaaagaacgggccaaattg
aaaaatacatcgaagtcttaa
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