Celerinatantimonas diazotrophica: CEDIAZO_03466
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Entry
CEDIAZO_03466 CDS
T07531
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEDIAZO_03466 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdiz03021
]
CEDIAZO_03466 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdiz03400
]
CEDIAZO_03466 (rpoC)
Enzymes [BR:
cdiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEDIAZO_03466 (rpoC)
Transcription machinery [BR:
cdiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEDIAZO_03466 (rpoC)
DNA repair and recombination proteins [BR:
cdiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEDIAZO_03466 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Cas_Cas02710
Motif
Other DBs
NCBI-ProteinID:
CAG9298271
LinkDB
All DBs
Position
CEDIAZO_genome:complement(3748990..3753189)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFEGIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVTEPGMTTLERGQMLTEEQYLDSLEEYGDEFEAKM
GAEAVLDLLRQIELAKEIEVMREELGATNSETKRKKLTKRLKLMEAFEQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREGAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAMQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMATNNVLSPANGDPIIVPSQDVVLGLYYATRPKINVKGEGMYLESPKEAEKLYRAG
VVDLHARVKVRIREVEVADDGSRVEKIELKDTTVGRAIMWLIFPDGLPFSLLDNALGKKQ
ISKLINVCYRRLGLKASVIFADQLMYTGYHYATLSGISIGINDMEIPPEKAQIIGDAEAE
VTEIQEQFQSGLVTAGERYNKAIDIWATANDKLSKAMMANLSTETVINRDGEEESQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHDGVMMTPLIEGGDVVEPLRERVL
GRVVAEDVIKPGTDNEVLVERNTLLDEKLCDVLETNSVDHVLVRSVISCQVDYGVCAKCY
GRDLARGHQVGIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAESNIQVKNSGSVK
LHNAKYVKNSEGKVVITSRSTELTIIDEMGRTKESHKLTYGSILEAQDGGEVKAGDIVAN
WDPHTHPIITEVAGHIKFVDMIEGVTISRQTDELTGLSSIVVMDANERSGAGKEMRPMVK
MVDDDGKDLLIPGTDVVASYFLPGKAIVNLEDGAQINIGDALARIPQESGGTKDITGGLP
RVADLFEARQPKEPAILAEIDGTISFGKETKGKRRLVITPSEGDAYEEMIPKWRNLNVFE
GEKVQKGEVIADGPESPHDILRLRGIHAVAAYIVNEVQDVYRLQGVKINDKHIETIVRQM
LRKCIISTAGDSNFLPGEQVEVARVNIENRRLEAEGKQGATYQRELLGITKASLSTESFI
SAASFQETTRVLTEAAVSGKQDELRGLKENVIVGRLIPAGTGFAYHQQRRSRNEPAPQIT
ADEAEQNLADLLNAADHGE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttcttaagcaacaaaataagaccgaagagtttgaagggatc
aaaattggtctggcttcaccagatcagatccgtagttggtcatttggtgaagtaaaaaaa
ccggaaacgattaactaccggacttttaagcctgaacgcgacggtctgttctgtgcccgg
atttttggtccggtaaaagattacgagtgtttgtgtgggaagtacaagcgcctgaaacac
cgtggtgttatttgtgaaaaatgtggtgttgaggttactcaatccaaagtacgtcgtgaa
cgtatgggccacatcgagctggcatcgccagttgcacatatctggtttttaaaatcgctg
ccatctcgcatcggtttgttactagatatgacactgcgtgatattgaacgtgttctatat
tttgaatcgtttgttgtgactgaaccaggcatgacgacccttgaacggggtcagatgttg
actgaagaacagtatctggattcattagaagaatacggagatgaatttgaagcaaaaatg
ggagccgaagcggttctcgatttgctgcgtcagattgaactggccaaagaaattgaagtt
atgcgtgaagaattaggtgcaactaattctgaaacaaaacgcaaaaaactgacgaaacgc
ttgaagttaatggaagcgtttgaacagtctggcaataagccagaatggatgattctgact
gtgctacctgtactgccaccggatctgcgtccgttggtaccgctcgatggtggccgtttt
gcaacgtcagatttgaatgatctgtatcgtcgggtgattaaccgtaacaaccgtctgaaa
cgactgttggatctggcagcaccagacattattgttcgcaacgaaaaacggatgctacaa
gaagccgtcgatgcgcttcttgataatggtcgccgtggtcgtgcgattaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacaggggcgtttccggcag
aacttgcttggtaaacgtgtcgactattcaggtcgatcagtgattactgtaggtccatac
ctgcgtctgcatcaatgcggtttgcctaaaaaaatggcacttgaactgttcaagccattc
atctatggcaagcttgaagcgcgtggtctggcgacgaccatcaaggcggccaagaaaatg
gtcgagcgtgaaggggctgaagtttgggatatcttagaagaagttatccgtgaacatccg
gttatgcttaaccgtgcaccaaccttgcaccgtttggggatccaggcattcgaacctgtt
ttgatcgaaggtaaagcgatgcagttgcacccattagtgtgtgcggcttataacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacacttgaagcacagcttgaagcg
cggacgttgatgatggcaactaacaacgtgctatcgcctgccaacggtgatccaattatt
gttccttcacaggacgttgtcttgggcttgtattatgcaactcgcccgaaaattaacgtt
aaaggtgaagggatgtacctcgaaagcccgaaagaagctgagaagctttatcgtgctggc
gtggttgacttgcatgcgcgagtaaaagtccgaatccgtgaagttgaggttgcagatgac
ggctctcgtgttgaaaaaatcgaattaaaagataccaccgttggtcgtgccattatgtgg
ctgatcttccctgacggtctgcctttctcactgttagataatgcattgggtaaaaaacag
atctcaaaactgatcaacgtttgttatcgtcgtttgggactaaaagcttctgttattttt
gctgaccaattgatgtataccggttatcactatgcaactttgtcaggtatttctatcggc
attaacgatatggaaattccacctgaaaaagcacaaattattggtgatgctgaagcggaa
gttaccgaaattcaggaacagttccaaagtggtttggtgactgctggtgaacgctataac
aaagcgatcgatatctgggcgactgccaacgacaaactgtctaaagcgatgatggctaac
ctttcaactgaaacggttattaaccgtgatggtgaagaagaatcgcaggattcgtttaac
agtatttatatgatggccgattcaggggcgcgtggtagtgccgctcagatccgtcagctc
gctggtatgcgtggtctgatggcaaaaccggatggctctattatcgaaacgcctattatt
gcgaacttccgcgaaggtttgaacgtactccagtacttcatctctacgcatggtgctcgt
aaaggtttggcggatactgcactgaaaacagcaaactcaggttatctgacacgtcgtttg
gttgacgtcgctcaagacttagtcattgttgaagacgattgcggcactcatgatggtgtg
atgatgactccgctgattgaaggcggtgatgtggttgaaccactgcgtgaacgggtactg
ggtcgagtcgttgctgaagacgtcattaaaccaggaacggataacgaagtgctggttgag
cgtaatacgctgctcgacgaaaaactgtgtgacgttctagaaaccaactcagttgatcat
gtcctagttcgctctgtcattagctgtcaggttgactatggtgtgtgtgctaaatgttat
ggccgtgacttggctcgtggtcatcaggttggaattggcgaagcggtgggagttgttgct
gcacagtcaattggtgaaccgggtactcagctgaccatgcgtacgttccacattggtggt
gcggcatctcgtgcagcagcagaaagtaacattcaggtgaaaaactctggttctgtgaaa
ctgcacaacgctaagtatgtgaaaaactccgaagggaaagtggttatcacatcgcgttca
actgaactgaccattattgatgaaatggggcgtactaaagaaagtcataaactgacttac
ggtagtatccttgaagcgcaagatggcggagaagtgaaagcgggcgatatcgttgccaac
tgggacccacatactcacccaattatcaccgaagtagctggtcatattaaatttgttgat
atgatcgaaggcgttaccattagtcgtcaaaccgatgagttgactggtttgtcgagcatc
gtagtgatggatgcaaatgaacgctctggcgcaggtaaagaaatgcgtccaatggtgaaa
atggttgatgatgacggcaaagatctgctgatccctggtacggatgtggttgcatcttac
ttcttgcctggtaaagcgattgtcaacctcgaagatggcgcgcagattaatatcggtgat
gctctggctcgtattcctcaggaatctggcggtaccaaagatattaccggtggtctgcca
cgagttgccgacttgttcgaagctcgtcagcccaaagagccggctattctggcagaaatt
gacggtacgattagttttggtaaagaaaccaaaggtaaacgtcgtctggtcattacacca
agtgaaggtgatgcgtacgaggagatgattccaaaatggcgtaatctgaacgtgttcgaa
ggtgaaaaagtccagaaaggtgaagtcattgccgatggtccagaatcaccacatgatatt
ttgcgtctgcgtggtattcatgcagtggcagcttatatcgtgaacgaagtgcaagatgta
tatcgtttgcagggcgtgaaaatcaatgacaaacacattgagacgatcgttcgtcagatg
ctgcgtaaatgtattatcagcactgcaggtgacagtaacttcttaccgggtgaacaggtt
gaagtggcgcgcgttaatatcgaaaaccgtcgtttggaagccgaaggcaaacagggcgca
acttatcagcgcgaactgttagggattactaaggcatcgttgtcaactgagtcatttatc
tcagctgcatcgttccaggaaacgactcgcgtattgactgaagcggccgtcagcggcaaa
caggacgaattacgcggcctgaaagaaaacgttattgtaggtcgactgattcctgccggt
actggctttgcttatcaccagcaacgtcgtagccgtaatgaaccagcaccacagattact
gctgatgaagcagaacagaatctggcagatttgcttaacgcagctgatcacggcgaataa
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