Carnobacterium divergens: BFC22_12570
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Entry
BFC22_12570 CDS
T05644
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdj
Carnobacterium divergens
Pathway
cdj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFC22_12570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdj03400
]
BFC22_12570
Enzymes [BR:
cdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFC22_12570
DNA repair and recombination proteins [BR:
cdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BFC22_12570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Peptidase_M16
Motif
Other DBs
NCBI-ProteinID:
AOA00852
LinkDB
All DBs
Position
complement(2644796..2648329)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDIKQLLATTPDIANLLESIGQNTVQLVTGLSGSARTLVISTILEQKKKPIVIVAHNLF
HASQLIEDFSGFVPEDQLHLFPVDEMIQAEMSVSSPEYRAERVATLDFLLSGKKGIVIIP
LSGIRKLLPPKEIWKAARFKMKQGGELDPTHLAEQLVNMGYTREHLVGKPGEFSIRGGIV
DIYPLTEEHPIRVDLFDTEIDSLRYFEADTQRSIENIEKITILPATDVLFTKELLQKGAT
AFSEAVERNHDLIMDASEKEIFHQQLSPIVDAFDKGEPTDKLVMYTDFVYPKHTTVLEYI
HKNSLIIMDEYPRILETERRLVEEEAEWMTNKLAERKILRDQVFSNELRSVMKNQEQDIL
YFSLFQKGMGNLRFAQIHPFQYRSMQQFFGQMPLLKTEMERWTKQKNTIIVMVPDNERAK
KVHQTFKDFEIVSKVVKPKKLETGLVQITTGEIHNGFELPKEKIVVLNEREMFNKVTKKT
ARRQTLSNAERLKSYTELNPGDFVVHVNHGIGKYTGMETLEINGIHQDYMSVIYKDDAKL
FIPVTQINLLQKYVSSEAKTPKINKLGGAEWAKTKKKVAAKIEDIADDLIELYAARESEV
GYAFSPDDGYQVEFENAFPYSETDDQLRSAAEIKHDMEKKKPMDRLLVGDVGYGKTEVAM
RAIFKAVQDGKQAAFLVPTTILAQQHYESLVTRFEDFPIEIGLLSRFRTKKQQTETIAGI
KTGKVDVVIGTHRILSKDIDFYDLGLLVVDEEQRFGVKHKEKLKQLKSQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNPGAIREAIERELTRGGQVFYLYNRV
ETIEKKVDELQMLVPDAKIAYAHGQMTEGQLESILYQFVEGEYDVLVTTTIIETGVDIPN
VNTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFMYQANKVLNEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVMRKRGEEVKEEKTQVE
IDLAINAYLPGTYIEDERQKIEIYKRIRELKDLEEYTMLQDDLIDRFGEYPDEVADLLSI
GLIKMHSEKALIEFIKRNNNQIDVTLSQSGTEKLPAEEVFKALGDIPLRANVAVKKEKLV
VTFQLNNEPTYQWLDYLQKFAENVAAYFVEKSEASEK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattaaacaactcttagcaacgactcctgatatagcgaatttacttgaatcg
attggtcaaaatacggttcaattagttactggtttatcaggatcagcaagaacactagtc
atcagtacgattttagaacaaaagaaaaaaccgattgttatcgtcgcgcacaatttattt
catgccagtcaactgattgaagatttttcaggatttgttccagaagaccaactacattta
ttccccgtagatgaaatgattcaagcagaaatgtccgtctcgtcccctgaataccgtgcc
gagcgagtagcaacactagatttcttactgtcaggtaaaaaaggtatcgtcattattcca
ttatctggcattcgtaagctattgccaccaaaagaaatttggaaagcagcaagatttaaa
atgaaacaaggtggcgaattagatccaacccatttagctgaacaattagtgaatatgggc
tatacaagagagcatttagtagggaaaccaggtgaatttagcattcgtggtgggattgtc
gatatctacccactaacagaagaacaccctatccgagttgatttattcgatactgaaatc
gactcactacgctattttgaagcagatacccaacgctcaattgaaaatattgagaaaatc
actattttgcctgcaacggatgtcttgtttaccaaagagcttttacaaaaaggcgcaaca
gcatttagtgaagcagttgaacgaaaccacgatttaattatggatgcaagtgaaaaagag
atttttcatcaacagctaagcccaatcgtggatgcttttgataaaggcgagccaacggat
aagttagtgatgtataccgattttgtctatccaaaacatacaactgtacttgagtatatt
cacaaaaacagcttaatcattatggacgagtacccacgtattttagaaaccgagcgtcga
ctagttgaagaagaagcggagtggatgacgaataagctagctgaacgcaaaattttacga
gatcaagtcttttcaaatgaattaagaagcgtaatgaaaaatcaagaacaagacattcta
tacttctcactatttcaaaaaggtatgggaaatcttcgatttgctcaaattcatcccttc
caatatcgaagtatgcaacaattttttggccaaatgcctctattaaaaacagaaatggaa
cgctggacgaagcaaaaaaatacgattatcgtaatggttccagacaacgaacgcgctaaa
aaagtccatcaaacctttaaagattttgaaatagtaagcaaagtcgttaaacctaaaaaa
ttagaaacaggactcgttcaaattaccacaggcgaaatccacaacggatttgaattgcca
aaagaaaaaattgttgtcctaaatgaacgcgaaatgtttaataaagtgacgaaaaaaaca
gctcgcagacaaaccttatccaatgcagagcgtttaaaaagctacaccgagttaaaccca
ggtgattttgtcgtccatgtcaatcacggaatcggaaaatacactggaatggaaactctt
gaaatcaatggcattcatcaagattatatgtcagtgatctacaaagacgatgccaagctg
tttattcccgtaactcaaattaacttactgcaaaaatacgtttcctctgaagcgaaaact
ccaaaaatcaataaattaggaggcgcagagtgggcgaaaacgaagaaaaaagtagccgct
aaaatagaagacattgccgatgatttgattgagctatacgcagccagagaatcagaagta
gggtatgccttctcaccagatgatggctatcaagttgaatttgaaaacgcctttccatac
tcagaaaccgacgatcaactacgtagtgcagctgaaatcaaacacgatatggaaaagaaa
aagccaatggatcgcctgttagttggagatgtagggtacggaaaaaccgaagtcgctatg
cgtgctatttttaaggccgtacaagatggcaaacaagccgcgttcttagtcccaacaacc
attctagctcagcaacattacgaaagtcttgttacccgatttgaagattttccaattgag
ataggattgttaagtcgttttagaacgaaaaaacaacaaacggaaacaattgcaggcatt
aaaacagggaaagtggatgtcgtcatcggcactcaccgaatcctttcaaaagatattgat
ttttatgatttaggtttattagtagttgatgaagaacaacgatttggcgtgaagcacaaa
gaaaaattaaaacagttaaaatcacaagtggacgtgctaacgttaacagcaacaccaatt
ccaagaaccttacacatgtcaatgctaggcgtacgtgatttatcagttatcgaaacacca
ccagcaaatcgctaccctgttcaaacctacgtgatggagcaaaatccaggagctattcgt
gaagccatcgagcgagagctaacacgtggcgggcaagtcttttatctctacaatcgtgtt
gaaacaattgagaaaaaggtagatgagctgcaaatgctcgttccagatgctaaaattgcc
tatgcacatggtcaaatgacagaaggacagttggaaagtattttataccagttcgttgaa
ggtgaatatgatgttcttgtaacgacgacgattatcgaaaccggcgttgatatcccaaat
gtgaacaccttatttgttgaaaatgccgatcatatgggcttgtctcaactctatcaacta
agaggacgagtgggccgaagcaacagagtagcctacgcctatttcatgtatcaagcaaac
aaggtactaaatgaagtcagcgaaaaacgactgcaagccatcaaagactttaccgagtta
ggttcaggttttaagatcgcgatgcgcgatttatccatccgtggggcaggaaatttatta
ggtgcacaacaacatggctttattgattccgtcggatttgacttgtattctgaaatgcta
agtgaagccgtgatgcgaaaacgtggcgaagaagttaaggaagagaaaacacaggtggaa
attgatttggcaatcaatgcctatttaccaggcacgtatatagaagatgaacgtcaaaaa
attgaaatctataaacgcattcgtgaattaaaagacttagaagaatatactatgctacaa
gatgatttaattgaccgatttggcgaatatccagatgaagtagctgatttactatcgatt
ggactaattaaaatgcatagcgaaaaagccttaattgaatttattaaacgtaacaacaat
caaattgacgtcactctttctcaatcaggcactgaaaaattgccagctgaagaagtattc
aaagcactgggcgatattccattaagagcgaatgtcgctgttaaaaaagaaaaattagtc
gtaaccttccaattaaacaatgagccaacctatcaatggttagattatttgcaaaaattt
gcagaaaatgttgcagcttacttcgtagaaaaaagtgaagcatctgaaaaataa
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