Camelus dromedarius (Arabian camel): 105087142
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Entry
105087142 CDS
T04642
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cdk
Camelus dromedarius (Arabian camel)
Pathway
cdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105087142 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdk03019
]
105087142 (MTREX)
03041 Spliceosome [BR:
cdk03041
]
105087142 (MTREX)
03009 Ribosome biogenesis [BR:
cdk03009
]
105087142 (MTREX)
03016 Transfer RNA biogenesis [BR:
cdk03016
]
105087142 (MTREX)
Enzymes [BR:
cdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105087142 (MTREX)
Messenger RNA biogenesis [BR:
cdk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105087142 (MTREX)
Spliceosome [BR:
cdk03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105087142 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
105087142 (MTREX)
Ribosome biogenesis [BR:
cdk03009
]
Eukaryotic type
Pre-60S particles
Helicases
105087142 (MTREX)
Transfer RNA biogenesis [BR:
cdk03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105087142 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
105087142
NCBI-ProteinID:
XP_010976065
LinkDB
All DBs
Position
3:36759219..36846999
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTAAPGTKKDKEKEKGRWKGPSGSAEKAGKHFDGKLQSESTNIG
KTKRDADFEGTDEPFFGKKSRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccgctgcg
cccggaaccaaaaaagacaaagaaaaggagaaagggaggtggaaggggccatcagggtct
gcagaaaaggctggaaaacattttgatggtaaactacaatctgagtcaactaacattgga
aaaaccaagagagatgcagacttcgagggcacagatgaacccttttttggaaagaaatcc
agggtagaagagtcagtaacggaagacttaagtttggcagacttgatgcccagggtcaag
gtacaatcagttgaaactgttgaggggtgtacacatgaggttgctcttcctgcagatgaa
gattatctaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgaatatgccattgcactggccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctttgagtaaccagaaataccgt
gaaatgtatgaagagtttcaagatgttggtctgatgactggagatgttactatcaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtcgtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctaccattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgccatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaagtacttcgggatgctggtgatttggcaaaaggagat
caaaaggggcggaaaggaggaacaaaaggaccatcaaatgtattcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattattttcagtttcagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagagaagaagatggtt
gaagaagtattcagtaacgcaattgactgcttatctgatgaagataaaaagctcccgcag
gttgaacatgttcttcctctcttgaagcggggcattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttattcacgaat
gcccgaaaatttgatgggaaggattttcgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattgggaaacaactgcttaagggctcagctgatcctctaaat
agtgctttccatttgacttacaacatggttttgaacttactacgagtagaagaaattaat
cctgaatacatgttggaaaaatccttctatcagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcggaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctattataagattagacagcagcttgctaaattgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttctcaaaaaaa
tcaaatgttaagcctaattctggtgaactggatcctctatatgtagtagaagtactcctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaagcccgctaaacct
gacgagaaaggagagatgcaggttgttccagttttggtgcatcttctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccactggacaatagacagagtgtctta
aaatcaatacaggaagttcagaagcgttttcctgatggtgttcctttattagatcctatt
gatgacatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcataatgatccaaatttggaaactgtgtatact
ctttgtgaaaaaaaagcacagattgctatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcttacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgcgagata
agcagtgctgatgaacttcttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaggcaacagcactactaagctgctttgtgtttcaagagaattctagtgag
atgccaaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaatagcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctgagc
tcatttaaacctcacttaatggatgtggtatatacttgggcgactggagctacatttgcc
catatctgcaaaatgacggatgtttttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagacattgtgtttgctgccagcctc
tacttatag
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