Camelus dromedarius (Arabian camel): 105092803
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Entry
105092803 CDS
T04642
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cdk
Camelus dromedarius (Arabian camel)
Pathway
cdk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105092803 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cdk03041
]
105092803 (SNRNP200)
Enzymes [BR:
cdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105092803 (SNRNP200)
Spliceosome [BR:
cdk03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105092803 (SNRNP200)
Complex C
U5 SnRNP specific factors
105092803 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
105092803
NCBI-ProteinID:
XP_031297057
LinkDB
All DBs
Position
28:6845099..6870897
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgagatgaacccacaggagaggtg
ctatccctggttgggaagctggaaggcacccggatgggagataaggctcaacggaccaaa
ccacaaatgcaagaggaaagaagagccaagcgaagaaagcgtgatgaggaccgccatgat
atcaacaagatgaagggttacactctgctctcggagggcatcgatgagatggtgggcatc
atctacaagcccaaaactaaagagactcgggagacctatgaagttctgctcagcttcatc
caggctgcccttggggaccagccacgtgatatcctttgtggggcagctgatgaagttcta
gctgttttaaagaatgaaaagcttcgggacaaagaaaggagaaaggagattgacctgctg
ctgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactacggtggagacaaggaaatccagaatatggatgacaacattgatgagacatatgga
gtcaatgtacagtttgagtctgatgaagaggaaggtgatgaagatgtgtacggggaggtt
cgagaagaggcatctgatgatgacatggaaggagatgaggcggtggtgcgctgcaccctc
tcagccaaccttgtggcctcaggtgaactcatgagttccaagaagaaggatttgcaccct
cgggatattgatgcgttttggctacagcggcagctcagtcgcttctatgatgatgccatc
gtgtcgcagaagaaggcagatgaagtgttggagatcctgaagacggccagtgatgatcgg
gaatgtgagaatcagctggttctgctccttggtttcaacacttttgattttattaaggtg
ttgcggcagcataggatgatgattttgtactgtaccttgctggccagtgcacagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaagctgacccagagctatccaagttcctc
taccagctccacgaaacagagaaggaggatctgatccgggaggagaggtcccggagagag
cgagtgcgtcagtcccggatggacacagatctggaaaccatggatctggaccagggtggc
gaggcactggctccgcggcaggttctggacttggaggacctagtttttacccaggggagc
cacttcatggccaataaacgctgtcagcttcctgacggatccttccgtcgccagcgcaag
ggctatgaagaggtgcatgtgcctgccctgaagcccaagccatttggctcagaagaacaa
ctgcttccagtggagaagttgcccaagtacgcccaggcaggattcgagggcttcaaaact
ctgaatcggatccagagtaagctctaccgtgctgctctggagacagatgagaatctgctg
ctgtgtgctcctactggtgccgggaagaccaacgtggccctgatgtgtatgctccgagag
atagggaaacacattaacatggatggcaccatcaacgtggatgacttcaagattatctac
atcgctcccatgcggtctttggtacaggagatggtgggcagttttggaaagcgcctggcc
acgtatggcatcactgttgcagaactgactggcgaccaccagctgtgcaaggaggagatc
agcgccactcagatcatcgtctgcacccccgagaagtgggacatcattacccgcaagggt
ggggagcgcacctacacgcagctcgtgcggctcatcattctggatgagatccatcttctc
catgatgacagagggcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaggatgtccgactcatcggtcttagtgccaccctccccaactatgaagat
gtggccacgtttctgcgtgtcgatcctgccaagggcctcttctactttgacaacagcttc
cgcccagtgcctctggaacagacttacgtaggcatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gttctggtgtttgtccactcccggaaggagactgggaagacggccagggccatccgggac
atgtgcctggagaaggacacgctggggctgtttctgagagagggctcagcctccacggaa
gtccttcggacagaagctgagcagtgcaagaacctggagctgaaggatcttctgccttac
ggctttgccattcatcacgcgggcatgaccagagttgaccggacacttgtagaggatctt
tttgctgataaacacattcaggttttagtttccacggcaactctggcttggggtgtgaat
ctccccgcacacaccgtcatcatcaaaggcacccaggtatacagtccagagaaggggcgc
tggacagaactgggggcactggatattctgcagatgctgggacgtgctggaagaccgcag
tatgacaccaagggtgaaggcatcctcatcacttctcacggggagctccagtactacctg
tccctcctcaatcagcagcttcctattgagagccagatggtgtcgaagctgcccgacatg
ctcaatgcggaaatcgtgctggggaatgtccagaacgcaaaggatgcagtgaactggctg
ggctatgcctacctctacatccgaatgctccgatccccaaccctctacggcatctctcac
gatgacctcaagggagacccgctgctggaccagcgccgactggatctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtatgacaagaagacgggcaacttccag
gtgacagagctcggccgtatagccagccactactacatcaccaatgatacggtccagacc
tacaaccagctgctaaagcccactctgagtgagattgagcttttcagagtcttctccttg
tcctcagagttcaagaacatcactgtgagagaggaagagaagctggagttgcagaagttg
ctggagagggtgcccatccctgtgaaggagagcatcgaggaacccagtgccaagatcaat
gtgcttctccaggctttcatctcgcagctgaaattggagggctttgcactgatggctgac
atggtatatgttacccagtcagctggccggttgatgcgggccatctttgagatcgtccta
aaccgaggctgggcccagcttacagacaagaccctgaacctctgcaagatgatcgacaag
cgcatgtggcagtccatgtgtcctctgcgccagttccggaagctgcctgaagaagtagtg
aagaagattgagaagaaaaacttcccctttgagcgcctgtatgacttgaatcacaatgag
ataggggagcttatccgcatgcccaagatggggaagaccatccacaaatatgtccacctg
tttcccaagttggagctgtcagtgcacctgcaacctatcacacgctccaccctgaaagtg
gagctgaccatcacgccggatttccagtgggatgaaaaggtccatggttcctcagaggcg
ttctggattctggtggaggatgtggacagcgaggtgatactgcaccatgaatacttccta
ctcaaggccaagtatgcccaggacgagcacctcattacgttcttcgtgcctgtctttgaa
ccactgccccctcagtacttcatccgagtggtgtctgaccgctggctctcttgtgagacc
cagctgcctgtctccttccggcacctgatcctgccagagaagtacccgccccccaccgag
ctgctggacctgcagcccttgcccgtgtctgccctgagaaacagtgcctttgagagcctt
taccaagacaaatttcctttcttcaaccccatccagacccaggtgtttaacaccgtgtac
aacagcgatgacaacgtgttcgtgggcgcgcccacgggcagtgggaagaccatctgtgcg
gagttcgccatcctgcggatgctactgcagaactcagaggggcgctgcgtctacatcacc
cccatggaggccctggcagagcaggtgtacatggactggtacgagaagttccaggacagg
ctcaacaagaaggtggtgctgctgaccggggagaccagcaccgacctgaagcttctgggc
aaaggcaacatcattatcagcacccctgagaagtgggacatcctgtcccggcggtggaag
cagcgcaagaacgtccagaacatcaacctgttcgtggtggacgaggtccaccttattggg
ggcgagaatgggcctgtcttagaagtgatctgctcccgtatgcgctacatctcatcccag
attgagcgacccatccgaattgtggcgctcagctcctcactctcaaacgctaaggatgtg
gcccactggctggggtgcagcgccacctccactttcaacttccacccgaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacattagccacacgcagactcgcctgctg
tccatggccaagcccgtgtaccatgccatcaccaagcactcgcccaagaaacctgtcatc
gtctttgttccgtctcgcaagcagacccgcctcaccgccattgacatcctcaccacgtgt
gcggcggacatccagcggcagaggttcctgcactgcaccgagaaggatctgatcccctac
ctggagaagctgagtgacagcacgctcaaggagacgctgttaaatggggtgggctacctg
cacgagggcctgagccccatggagcggcgcctggtggagcagctcttcagctcaggggcc
atccaggtggtggtagcttctcggagcctctgctggggcatgaacgtggccgcgcacctg
gtgatcatcatggacacccagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgtgctgcagatggtggggcatgccaaccgccccctgcaggatgacgagggg
cgctgcgtcatcatgtgccagggctccaagaaggatttcttcaaaaagttcttatatgag
ccattgccggtagagtctcacctagaccactgtatgcacgaccacttcaacgctgagatt
gtcaccaagaccattgagaacaagcaggacgccgtggactacctcacctggaccttcctg
taccgccgcatgacacagaaccccaattactacaacctgcagggcatctcccatcgtcac
ctgtctgaccacttgtcagagctcgtggaacagaccctgagtgacctggagcagtccaaa
tgcatcagcattgaggacgaaatggacgtggcgcccttgaacctgggcatgatcgctgcc
tactattacatcaactacaccaccattgagctcttcagcatgtccctcaatgccaagacc
aaagtgcgagggcttatcgagatcatctccaacgcggccgagtatgaaaacattcccatc
cggcaccatgaagacaacctcctgcggcagttggctcagaaggtccctcacaagctgaat
aatcctaagttcaacgaccctcacgtcaagaccaacctgctcctgcaggctcacttgtcc
cgcatgcagctgagcgctgagctgcagtccgacacagaggaaatcctcagcaaggcaatc
cggctcatccaggcctgtgtggacgtcctgtccagcaacgggtggctcagccctgctctg
gcagccatggaactggcccagatggtcacccaagccatgtggtccaaggactcatacctg
aagcagctgccacacttcacctcagagcatatcaaacgttgcacggacaagggggtggag
agtgttttcgacatcatggagatggaggacgaagagcgcaacgcgctgcttcagctgact
gacagccagatcgccgacgtggcccgcttctgcaaccgctaccccaacatcgagctgtcc
tacgaagtggtggataaggacagcatccgcagtggcgggccagttgtggtgctggtgcag
ctggagcgagaggaggaggtcacaggcccggtgattgcacctctcttcccacagaaacgt
gaagagggctggtgggtggtgattggagatgccaagtccaacagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgactttgtggccccagccactggt
gcacacaactacactctgtacttcatgagcgatgcttacatgggatgtgaccaggaatac
aaattcagcgtggatgtgaaggaagctgagacagacagtgactcagactga
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integrated database retrieval system
