Camelus dromedarius (Arabian camel): 105098930
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Entry
105098930 CDS
T04642
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cdk
Camelus dromedarius (Arabian camel)
Pathway
cdk03030
DNA replication
cdk03410
Base excision repair
cdk03420
Nucleotide excision repair
cdk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105098930 (LIG1)
03410 Base excision repair
105098930 (LIG1)
03420 Nucleotide excision repair
105098930 (LIG1)
03430 Mismatch repair
105098930 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdk03032
]
105098930 (LIG1)
03400 DNA repair and recombination proteins [BR:
cdk03400
]
105098930 (LIG1)
Enzymes [BR:
cdk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105098930 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
105098930 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
105098930 (LIG1)
DNA replication proteins [BR:
cdk03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
105098930 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
105098930 (LIG1)
DNA repair and recombination proteins [BR:
cdk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
105098930 (LIG1)
NER (nucleotide excision repair)
Other NER factors
105098930 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
105098930 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
105098930
NCBI-ProteinID:
XP_031314852
LinkDB
All DBs
Position
9:complement(69029855..69068216)
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEETSNSTRETESPPKAALKERNRMVPEGDSPVKRPGRKVA
RVLGSEGEEEEEAPSPLKGQKPAPDSPQNSPPHPVTLPKSPSLSNTSPAVLSPPAIPAIP
KRRTARKQVPKRTFLEVLEEQSKDRVTEAKKKKEDKAELETPSESLTEPEVGKKEEADAK
EQPTTPPRPRETPEAEPLTESVCKPEMATKQGPQEDGQTQPPRPAAKTLSSFFSPRKPAV
KKEAEEEGPGSVRKEAAKGHLDPPSYNPAKNNYHPIEDACWQPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGIGDGILLKAVAQ
ATGRQLESVRAEATEKGDVGLVAESSRSMQRLMLPPPALTAAGVFAKFRDIAQLAGNAST
TKKMDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLAHGLEQLPEHCRLSPGIPL
KPMLAHPTRGVGEVLKRFEEAAFTCEYKYDGQRAQIHLLEGGEVRIFSRNQEDNTGRYPD
VISRVPKIKLPSVTSFILDTEAVAWDQEKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCE
GLMVKTLDTDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPAPRPYVRADGAVTPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFLRVREDKKPEQATTSAQVACLYRKQ
SQIQNQHGAEPDSEPEDFY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccagcccaagaaagaaggcaaagtgaagaagcca
gaggagacatccaacagcaccagagaaacagagtcccctccaaaggcggctctgaaagag
cggaatagaatggtgcctgagggcgactctccagtgaagaggccggggaggaaggtggcc
cgggtcctgggcagcgagggggaggaggaggaggaagccccctcgcccctcaaaggccag
aagcctgcaccagactctccacagaactcccctccccatcctgtcacacttcccaagagc
ccttccctctccaacacctctccagcagtcctctccccgccggcgatcccggcgatccca
aagcgtcgcacagcccggaagcaggttcctaaacggacatttctggaagtcctggaagag
cagagcaaggacagggtcacagaagccaagaagaagaaggaggacaaagcagaactagag
accccatcagaaagcctcacggagcctgaagtgggcaaaaaggaggaggcagatgcgaag
gagcagcccacgacgccccccagaccccgagagacccccgaagccgagcccctgacagaa
agtgtttgcaagcctgagatggcaacgaagcagggaccacaggaggacggccagacacag
cctccccgcccagctgccaagacactcagcagtttcttctccccccgaaagccggcagtc
aaaaaggaagctgaagaagagggacctggctctgtaagaaaggaggcagccaagggacac
ctggacccacccagctacaacccggccaagaacaactaccatcccattgaagatgcctgc
tggcagccgggccagaaggtcccttacctggccgtggcccggacctttgagaagatcgag
gaggtttctgctcggctccgcatggtggagacactgagcaacttgctgcgctccgtggtg
gccctgtcacctccagacctcctccccgtcctctacctcagcctcaaccgcctggggccg
ccccagcagggcctggagctgggcattggtgacggtatccttctcaaggcagtggctcag
gccacaggtcggcagctggagtcggtccgggccgaggccacagagaagggcgacgtgggg
ctggtggccgagagcagccgcagcatgcagagactcatgctgcccccgcctgccctgacc
gccgccggtgtcttcgccaagttccgggacatcgcccagctggccggcaatgcatccaca
accaagaagatggacatcatcaaaggcctctttgttgcctgccgccactcagaagctcgg
ttcatcgccagagccctgagtggacgcctgcgcctcggactggcagagcagtcagtgctg
gccgccctcgcccaggccgtgagcctcacaccccctggccaagaattccccccggccgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacgtggctggaggagcaaggc
atgatcctgaaacagacgttctgcgaggtgccagatctggaccggatcgtccctgtgctg
ctggcacatggcctggagcagctgccggagcactgcaggctgagcccagggatccccctg
aaaccaatgttggcccaccccacccggggcgtcggcgaggtcctgaaacgcttcgaggag
gcagctttcacctgcgagtacaaatacgatggacagagggctcagatccaccttctggaa
ggtggggaggtgaggatcttcagcaggaatcaggaggacaacacaggaaggtaccccgac
gtcatcagccgcgtcccaaagattaaactcccatcagtcacatccttcattctggacact
gaagccgtggcttgggaccaggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggacgcagcggagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctctcccgacgccgccag
ctgctccgggagaacttcgtggagacggagggcgagtttgtcttcgccacctccctggac
accaaggacacggagcagatcgctgagttcctggagcagtcggtgaaagactcatgcgag
gggctgatggtgaagaccctggacaccgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgacggcgtgggcgacaccctggacctcgtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcttgctg
gcctcctacgacgaggagagcgaggagctgcaggccatatgcaagctggggactggcttc
agtgacgaagagctggaagagcatcaccagagcctccaggccctggtgctgcccgcccca
cgcccctatgtccgggcagacggcgccgtgacccccgaccactggctggaccccagcgcc
gtgtgggaggtcaagtgcgccgacctctccctctcccccatctaccccgctgcccggggc
ctggtggacagcgagaagggcatctccctgcgcttcccgcggtttctgcgcgtccgggag
gacaagaagccggagcaggccaccaccagtgcgcaggtggcctgtctgtacaggaagcaa
agtcagattcagaaccagcacggcgcagagccggactccgagccggaggatttctactag
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