Camelus dromedarius (Arabian camel): 105101076
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Entry
105101076 CDS
T04642
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cdk
Camelus dromedarius (Arabian camel)
Brite
KEGG Orthology (KO) [BR:
cdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cdk03016
]
105101076 (RTCB)
Enzymes [BR:
cdk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105101076 (RTCB)
Transfer RNA biogenesis [BR:
cdk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105101076 (RTCB)
Prokaryotic type
tRNA splicing ligases
105101076 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
105101076
NCBI-ProteinID:
XP_010992481
UniProt:
A0A5N4DFT7
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All DBs
Position
12:25841556..25861567
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKTIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataacgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctacgtgaatgat
gctctggaaaaattaatgtttgaagaattaaggaatgcatgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctggaattgttcat
cgatccattgggcttcctgatgtccattcaggctatgggtttgctattgggaatatggca
gcttttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtcccta
agggaaggttatgcgtgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaacaaggtctctgccagggccaaaaaacgaggccttccccagttgggg
accctaggagcaggcaaccattatgcagaaatccaggttgtggatgagattttcaatgaa
tacgcagctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccatagt
ggaagcagaggcttgggccaccaagtagccacagacgcactggtggctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaattgcttcc
ccagagggtcaggactacctgaagggaatggcagcagctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgccaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgatgtttctcacaatattgccaaagtagaacag
cacgtggtggacggaaaggaacggactcttttagtacacaggaaggggtctacccgtgct
ttccctcctcaccatcccctcattgctgttgattaccaactcactggacagccagtgctc
attggtggcaccatgggaacctgtagctatgttcttactggcactgagcagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcactgtcccgagcaaaatcaaga
cgtaatttagatttccaggatgtcctagacaaattggcagatatgggaattgcaatccgt
gttgcctcacccaagttggttatggaagaggcacctgagtcctataaaaatgtgaccgat
gtggtgaacacctgccatgatgctggaatcagcaagaagaccattaaactgagaccaatt
gctgttatcaaaggatag
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