Camelus dromedarius (Arabian camel): 105101744
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Entry
105101744 CDS
T04642
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cdk
Camelus dromedarius (Arabian camel)
Pathway
cdk04140
Autophagy - animal
cdk04148
Efferocytosis
cdk05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cdk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105101744 (VPS39)
04148 Efferocytosis
105101744 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105101744 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cdk04131
]
105101744 (VPS39)
Membrane trafficking [BR:
cdk04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
105101744 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
105101744
NCBI-ProteinID:
XP_031309105
LinkDB
All DBs
Position
6:22184541..22224031
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AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVSADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLA
IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDQNKDGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccaatcctagaaaagctgcctctgcagatcgactgt
ctggccgcctgggaggaatggctgcttgttggaacaaaacaaggacatcttcttctttat
aggattagaaaggatgttgtgtcagcagatgtagcatcacctgagagtggcagttgcaac
aggtttgaagtgacactagagaaatccaataagaacttctccaaaaagattcagcagatc
catgtggtttcccagtttaagatcctggtcagcttgttagaaaataatatttatgtccat
gacctgttgacatttcaacaaatcactacggtttctaaggcaaagggagcatcactgttc
acatgtgacctccagcacacagagactggtgaggaggtgttgcggatgtgtgttgccgtg
aaaaagaagctgcagctctatttctggaaagacagggaatttcatgaattgcagggggac
tttagtgtaccagatgtacccaaatccatggcatggtgtgaaaactctatctgtgtgggt
ttcaagagagactactacctaataagggtggatggaaaggggtccatcaaagagctcttt
ccaacaggaaaacagctggaacccttggttgcccctctggcagatggaaaagtagccgtg
ggtcaggatgatctcacagtggtgctcaatgaggagggggtctgcacgcagaagtgtgcc
ctgaactggacagacatcccggtggccatggagcaccagcctccctacatcattgcagtg
ttgcctcgatatgtggagatccgaacatttgagccaaggctcctggtccagagcattgaa
ttgcaaaggcctcgtttcattacctcgggaggatcaaacattatctatgtggccagcaac
cattttgtttggagactcattccagtccccatggcaacccaaatccagcagcttctccag
gacaagcagtttgaattggctctgcagcttgcagaaatgaaagatgattctgacagtgaa
aagcagcaacagatacatcacatcaagaacttgtatgccttcaacctcttttgccagaag
cgttttgatgagtccatgcaggtctttgctaagcttggcacagatcctacccatgtgatg
ggcctgtaccctgacctgctgcccacggactacaggaagcagctgcagtatcctaacccg
ctgcctgtgctctctggggctgaactggagaaggctcacttggctctgattgactacctg
acgcagaaacgaagccaactggtaaagaagctgaatgactccgatcaccagtccagcacc
tccccactcatggaaggcactcctaccatcaaatccaagaagaagctgctacagatcatt
gacaccaccctgctcaagtgttacctccatacgaacgtggccctggtggcccccttgctg
cgcctggagaacaatcactgccacatcgaagagagtgaacatgtgctgaagaaggctcac
aagtacagtgaactgataatcctgtacgagaagaaggggctccacgagaaagctctgcag
gtgctggtggaccagtccaagaaagcaaactcccctctgaaaggccacgagaggacggtg
cagtacctgcagcatctgggcacagaaaacctgcatttgattttttcctactcggtgtgg
gtgctgagagacttcccagaggatggcctgaagatatttactgaagacctcccagaggtg
gagtctctgccacgagaccgagtgcttggcttcttagtggagaattttaagggcctggct
attccatatctggaacacatcatccacgtttgggaggagacaggctctcggttccacaac
tgcctgatccagctgtactgtgaaaaggtgcaaggtctgatgaaggagtatctcctgtcc
ttccctgcaggcaaaactccagtccccgctggagaggaggagggggagctgggagaatac
cgacagaagctcttgatgttcctggaaatttccagctactatgatccgggccggctcatc
tgtgattttccttttgatggcctcttagaagagcgtgctctcctcctgggacgcatgggg
aaacacgaacaagctctcttcatctatgtccacatcctgaaggataccaggatggctgaa
gagtattgccacaagcattatgaccaaaacaaagatggcaacaaagatgtgtatctgtcc
ctgctccggatgtacctgtcaccccccagcgtgcactgcctggggccaatcaagctggaa
ctgctggagccacaagccaacctccaggccgccctgcaggtcctcgagctgcaccacagc
aaactggacaccaccaaggccatcaacctcctaccagcaaacactcagattaatgatata
cgcatctttctagaaaaggtcttggaagagaatgcgcaaaagaaacggttcaatcaagtg
ctcaagaaccttctccatgcagagttcctgagggtccaggaagagcggattttacaccag
caggtgaagtgcatcatcacggaggagaaggtgtgcatggtctgtaagaagaagattggc
aacagtgcatttgcaagataccccaacggagtggtcgtgcactacttctgctccaaagag
gtcaacccagctgatacctga
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