Clostridioides difficile R20291: CDR20291_0440
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Entry
CDR20291_0440 CDS
T00998
Name
(GenBank) cell surface protein (putative hemagglutinin/adhesin) precursor
Organism
cdl
Clostridioides difficile R20291
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FIVAR
CW_binding_2
DUF4972
DUF4265
Motif
Other DBs
NCBI-ProteinID:
CBE02230
UniProt:
A0A9R0BI71
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Position
525456..528968
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AA seq
1170 aa
AA seq
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MDKGEENKMKIPKKIAAMLTVTMIAGSSTAGIASAQTVATNLTGQERYETAVKISQDGWK
NADEVVIVNDSSIADALSATPFAKAKNAPILLTSKDKLNDKTKAEIQRLKAKKVYLIGGT
SVLSTNIEKEIKDLKISFERISGAERYQTSLELAKKLDAISDVKKIAVVNGEKGLADAVS
VGAPAAQNNMPVILADSKNGTAVADKFIKDAGITQSYVVGGESSISEAVKNKLPNSTRLG
GTDRNDTNAKVIKEFYKKTDLKNAYVTKDGMNKQDQLIDALAVGVLGAKNQSPVVLVGKN
LSASQKSLVNSKSFDKITKVGGNGNETAFNEMKSLQEVKTVEAKTISELKSAIDKATAND
VINFKPTSEVKEAFTIQTDKAITVNLNGTYTKTVTINMPNGDVNNYAKVDDVVIDDVKDG
TFVNYGKITNLKVNDKNGAKIENNSKGEIGSLTVASGASQVKVTNGGKITTVTNNSKGTT
IDNKGTISSVKGDNSPTISGNSPSSNSSGGSSSSGGSSHGGGSSSSKVDKVVLKNTITAA
NKLYNEAIEGTNVGEYKVGSKAIYKTAIDKAQAILDKSGVTQKEVNDAVTALNTATDTFK
AGKVVAVDKTALQDAVTAATALHAKATEGTAEGNYAVGSKATYKTAIDEAQAILDKSDAT
QKEVNDALSALNTATETFEAGKVVAVDKTALQDAVTAATALHNGATEGTAEGNYAVGSKA
TYKTAIDEAQAILDKSDATQKEVNDALSALNTATETFEAGKVVAVDKTALQDAVTAATAL
HNGATEGTAEGEYAVGSKATYKTAIDEAQAILDKSDATQKEVNDALTALNTATETFEAGK
VVAVDKTALQDAVTAATALHNGATEGTAEGNYAVGSKATYKTAIDEAQAILDKTGATQKE
IDDALSALNTATDTFKAGKVVLNKTALQDAVTAATSLHAGATEGTAEGNYAVGSKATYKT
AIDEAQAILDKTGATQKEIDDALSALNTATDTFKAGKVVLNKTALQDAVTAATSLHAGAT
EGTAEGNYAVGSKATYKTAIDEAQAILDKTGATQKEIDDALSALNTATDTFKAGKVVLNK
TALQDAVTAATSLHAGATEGTAEGNYAVGSKATYKTAIDEAQAILDKADATQKEIDDAVT
ALNTATATFEAGKVPTTIALMLSRILGFMK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggacaagggggaagaaaataaaatgaaaataccaaagaagattgctgcaatgcttaca
gttacaatgatagctggaagttcaacagcaggcatagctagtgcacaaactgtggcaaca
aatttaacagggcaagaaagatatgaaactgctgttaaaataagtcaagatggatggaaa
aatgctgatgaggtagtaatcgtaaacgactcatctatagcagatgctctatctgcaaca
ccatttgcaaaagcaaaaaatgctccaatacttttaacaagtaaagataaattaaatgat
aagacgaaagcagaaatacaaagattaaaagctaaaaaagtatacttaataggtggaact
tctgtattaagtacaaatatagaaaaagaaataaaagatttaaaaatatcttttgagaga
atctctggagctgagagatatcaaacatccttagaattagcaaagaaattagatgctata
agtgatgttaagaaaatagctgtagttaatggtgaaaaaggacttgcagatgctgtaagt
gtaggagcaccagctgcacaaaacaatatgccagtaatacttgctgattctaaaaatgga
acagcagttgcagacaaatttataaaagatgctggaataactcaatcttatgtagtaggt
ggagagagttcaatttctgaagctgttaaaaataaactaccaaatagtacaagactaggt
ggaacagatagaaatgatacaaatgcaaaagtaataaaagaattttataaaaagacagat
ttaaaaaatgcttatgtaactaaagatggtatgaataaacaagaccaacttatagatgca
ctagcagtaggtgtattaggtgctaaaaatcaatcaccagtagttttagttggaaagaac
ttatcagcttcacaaaaatctctagttaactctaagagttttgataagataactaaagtt
ggtgggaatggtaatgagacagcatttaatgaaatgaagtcattacaagaagtaaaaaca
gttgaagctaaaacaatttctgaattaaaatcagctatagataaagctactgctaatgat
gttataaactttaagccaactagtgaggttaaagaagcatttacaatacaaactgataag
gcgataacagtaaacttaaatggtacatatacaaagactgtgactatcaacatgcctaat
ggtgatgtaaataactatgcaaaagtggatgatgtagttatagatgatgtaaaagatgga
acttttgttaactacggaaaaataactaacttaaaggttaatgataaaaatggagccaag
atagaaaataattctaaaggtgagattggtagtttaacagtagcatctggagcaagtcaa
gtaaaagtgactaatggtggtaagataactacagttacaaataattctaaaggaactact
atagataataaaggtacaataagtagtgttaagggagataattctccaacaataagtgga
aatagtccaagttctaactcttcaggaggaagttcatcaagtggaggttcttcacatgga
ggaggaagttcttcatcaaaagtagataaagtagttttgaaaaatacaataacagcagca
aataaattgtataatgaagcaatagagggaacaaatgtaggtgaatataaagtagggtca
aaagcaatatataaaacagcaatagacaaagcacaggcaatattagacaaatctggtgta
acacaaaaagaagtaaatgatgcagtaacagcattaaacacagcaacagacacatttaaa
gcaggaaaagtagtagcagtagataaaacagcattacaagatgcagtaacagcagcaaca
gcattacatgctaaagcaacagaaggaacagcagaaggaaactatgctgtaggatcaaaa
gcaacgtataaaacagcaatagatgaagcacaggcaatattagacaaatctgatgcaaca
cagaaagaagtaaatgatgcattatcagcattaaacacagcaacagagacatttgaagca
ggaaaagtagtagcagtagataaaacagcattacaagatgcagtaacagcagcaacagca
ttacataatggagcaacagaaggaacagcagaaggaaactatgctgtaggatcaaaagca
acgtataaaacagcaatagatgaagcacaggcaatattagacaaatctgatgcaacacag
aaagaagtaaatgatgcattatcagcattaaacacagcaacagagacatttgaagcagga
aaagtagtagcagtagataaaacagcattacaagatgcagtaacagcagcaacagcatta
cataatggagcaacagaaggaacagcagagggagaatatgctgtaggatcaaaagcaacg
tataaaacagcaatagatgaagcacaggcaatattagataaatctgatgcaacacagaaa
gaagtaaatgatgcattaacagcattaaacacagcaacagagacatttgaagcaggaaaa
gtagtagcagtagataaaacagcattacaagatgcagtaacagcagcaacagcattacat
aatggagcaacagaaggaacagcagaaggaaactatgctgtaggatcaaaagcaacatat
aaaacagcaatagatgaagcacaggcaatattagacaaaacaggtgcaacacaaaaagaa
atagatgatgcattatcagcattaaacacagcaacagacacatttaaagcaggaaaagta
gtattaaataaaacagcattacaagatgcagtaacagcagcaacatcattacatgctgga
gcaacagaaggaacagcagaaggaaactatgccgtaggatcaaaagcaacatataaaaca
gcaatagatgaagcacaagcaatattagataaaacaggtgcaacacaaaaagaaatagat
gatgcattatcagcattaaacacagcaacagacacatttaaagcaggaaaagtagtatta
aataaaacagcattacaagatgcagtaacagcagcaacatcattacatgctggagcaaca
gaaggaacagcagaaggaaactatgctgtaggatcaaaagcaacatataaaacagcaata
gatgaagcacaggcaatattagacaaaacaggtgcaacacaaaaagaaatagatgatgca
ttatcagcattaaacacagcaacagacacatttaaagcaggaaaagtagtattaaataaa
acagcattacaagatgcagtaacagcagcaacatcattacatgctggagcaacagaagga
acagcagaaggaaactatgctgtaggatcaaaagcgacatataaaacagcaatagatgaa
gcacaagcaatattagataaagcagatgcaacacaaaaagaaatagatgatgcagtaaca
gcattaaacacagcaacagctacatttgaagcagggaaagtacctactacaattgcatta
atgttatcaagaatactaggatttatgaaataa
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