Clostridioides difficile R20291: CDR20291_0894
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Entry
CDR20291_0894 CDS
T00998
Name
(GenBank) putative helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cdl
Clostridioides difficile R20291
Pathway
cdl03420
Nucleotide excision repair
cdl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDR20291_0894
03430 Mismatch repair
CDR20291_0894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdl03400
]
CDR20291_0894
Enzymes [BR:
cdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDR20291_0894
DNA repair and recombination proteins [BR:
cdl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDR20291_0894
MMR (mismatch excision repair)
Other MMR factors
CDR20291_0894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_11
UNC80_C
NucS_C
ResIII
DEAD
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CBE03024
UniProt:
A0A9R0CDT9
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All DBs
Position
1099964..1102183
Genome browser
AA seq
739 aa
AA seq
DB search
MININYREDQIPIINYDNGTMAVPAVPGAGKTFIITNLVAKLLLEQKHKGGKILILTYMN
SAVNNFKGRIRKILEENKIDDTNSYEVMTIHSLAVKIIKEKPEVVMLSEDFNIADDLQKS
IILNECISRFRFEGGERAFRWFLKEQKDERWKEIALEAWERGFFEFAGNAISELKYKGIS
PDKLEEILSRGHKGMLKIILPIYKLYDRKLKQNGLLDYDDILILAEKTLSLDEGLRKKFQ
TRYKYIFEDECQDSNEIQGNIIKIISSENKNLVRVGDINQSITGTFSSSDPKFFKEFINS
ADFCYRMDMSNRSSKDILDLANTLVKYVTKEFRQEECRHALEDMQIKTVPNGMGYKENPN
PEHYNINVKWYESWKIEIEQTARYVKGIKNKYPDKSIGILVPFNEQVTQVAKELRENNLT
FEELGPNSLNKRKVINNIAYIIDFMLHCDDVEKLIVVLNKVFIDTDNEEEIKYFLEELKN
YSTEEIIYNFEFSKLDNDLIEFKEESDIYLSFKRGIDIIKQILEYPIIRLDLLVLFIGKK
LNLEKEDKAVLDYISFYIKYLISENINMDLEDVYNLLFDVKNRVFNHIIDVVYEINGYEP
EPGSITLCNYHKSKGMEWDCVFLLGLVEYNFPDNINQKFQSDKWYLKEKYKNPMAIIKSE
VEAILKGSISTDYAHKTKIDSINEKIRLLYVGITRAKEMLVLSGSAYRDESDIGNKRKEQ
KPCIYLSRLNQHIIEKRSN
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgattaatataaattatagagaagaccagataccaataataaattacgataatggtact
atggcagtaccagcagtaccaggtgctggaaaaacatttataataacaaatttagtagct
aaactattacttgaacagaaacataagggtggtaaaatattaattcttacatatatgaat
agtgctgtaaataattttaaaggtagaataagaaagattcttgaagagaataaaatagat
gatactaattcgtatgaagtaatgactatacacagtttggctgtaaaaataataaaggaa
aagccagaagttgtaatgttaagtgaggattttaacatagctgacgatttgcaaaaaagt
attatattaaatgaatgtataagtagatttagatttgaaggtggagaaagagcttttaga
tggtttttaaaggagcaaaaagatgaacgctggaaagaaatagctcttgaagcctgggaa
agaggtttttttgaatttgcaggaaatgcaataagtgaacttaagtataagggaatttct
ccagataaacttgaagaaatattgtcaagaggacacaaaggaatgcttaaaattatttta
ccaatatataaattgtatgatagaaaattaaagcaaaatggattgctagattatgatgat
atattaattttagcagaaaaaactttaagcttagacgaagggcttagaaagaagtttcaa
actagatacaaatatatatttgaagatgagtgtcaggactcaaatgaaattcaaggtaat
ataataaaaattatatctagtgaaaataaaaacctagttagagttggagatataaatcag
agtataacaggaacattttcatcatcagaccctaaattttttaaagaatttataaatagt
gcagatttctgttataggatggatatgtcaaatcgaagttcaaaagatatacttgattta
gcaaacactcttgtcaagtatgttacaaaggaatttagacaagaagaatgtagacatgct
cttgaagatatgcaaataaaaactgtgccaaatggaatgggatataaagaaaatcctaat
ccagaacattataatataaatgtaaagtggtatgagagttggaaaattgaaatagagcaa
actgctagatacgttaagggtataaaaaataaatatccagataaaagtataggtatattg
gttccatttaatgaacaagtgacacaagttgctaaagaacttagagagaataatctaacc
tttgaagaattaggaccaaattctttgaataaaaggaaggttataaacaacatagcatat
attattgattttatgttacattgtgatgatgtagaaaagttaatagttgtacttaataaa
gtttttatagatactgataatgaagaagaaataaagtattttttagaagaattaaaaaac
tattctaccgaagaaattatttataattttgaatttagtaagttagataatgatttaata
gaatttaaagaagaaagtgacatatatttaagttttaaaagaggaatagatattataaaa
cagatattagaatatccaataataaggttagacctcttagttttgtttattgggaaaaaa
cttaatttagaaaaagaagataaagctgtactggattatatatctttttatataaagtat
ctaatatcagaaaatataaatatggatttagaagatgtatataatttattgtttgatgta
aagaatagggtgtttaatcatataatagatgtggtatatgagataaatggatatgaacca
gagcccggtagtataacactatgtaactatcataagtcaaaggggatggaatgggattgt
gtgtttttactaggtcttgttgaatataatttccctgacaatattaatcaaaagtttcag
agtgataaatggtatctaaaagaaaaatataaaaaccctatggcaattattaaatcagaa
gttgaagctatattaaaaggaagtatttcaacagattatgctcataaaacgaagattgat
tctataaatgaaaagattagacttttatatgtagggattactagagcaaaggaaatgtta
gtactttcaggaagtgcttatagagatgaaagtgatatagggaataagagaaaagagcaa
aaaccatgtatatatttaagcagacttaatcaacatattattgaaaaaaggtcaaattaa
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