Clostridioides difficile R20291: CDR20291_1743
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Entry
CDR20291_1743 CDS
T00998
Name
(GenBank) putative conjugal transfer protein pseudogene
Organism
cdl
Clostridioides difficile R20291
Pathway
cdl03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
cdl00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
CDR20291_1743
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
HigB-like_toxin
DEAD
DUF3970
AAA_19
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CBE04530
LinkDB
All DBs
Position
join(2042600..2043583,2059200..2059823)
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AA seq
535 aa
AA seq
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MIDKILKDIKGLFKVQDKAKFLKQNIPYLAFFYVGNIFSHHVRAYTGGDVIDKIFQGILE
LNTMSFLPSIHPTDILMGVVVAVLIKIIVYTKGKNAKKFRQGKEYGSARWGTKKDIEPYM
DEKFQNNILLTQTERLTMNGRPANPKYARNKNVLVIGGSGSGKTRFYVKPNLMQMHSSYC
VTDPKGTIVLECGKMLEDNGYEIKILNTINFKKSMKYNPFAYLRSEKDILKLVQTIIANT
KGEGEKSGEDFWVKAEKLYYTALIGYIFYEAPREEKNFATLLDMIDASEVREDNETYMNP
IDRLFEALEKKEPTHFAVKQYKKYKLAAGKTAKSILISCGARLAPFDIQELRDLMSDDEL
ELDTLGDRKTALFVIISDTDDTFNFVVSIMYSQLFNLLCDKADDVYGGRLPVHVRCLLDE
FANIGLIPKFEKLIATIRSREISASIILQAQSQLKAIYKDNADTIVGNCDSTLFLGGKEK
TTLKELSETLGKETIDLYNTSETRSNQKSFGLNYQKTGKDMPYLFVKSSVALNFT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgatagataagatactaaaagacatcaaaggcttatttaaggtgcaagataaggcaaag
tttctaaagcagaacattccctatcttgcatttttctatgttggcaatatcttttctcat
catgtaagagcatatactggtggcgatgtaatagacaaaatatttcaaggtatactggaa
cttaacaccatgagctttcttccaagcattcatcctacggatattttaatgggagtggta
gtagctgttttaatcaaaattatcgtatataccaaagggaaaaatgctaaaaagtttaga
caggggaaagagtatggctcagcaagatggggaacgaaaaaagatatagagccatatatg
gatgaaaagtttcaaaacaatatcctacttacgcaaacagaacgattaaccatgaatggc
agaccggcaaatccaaagtatgcaagaaataagaatgtacttgtaatcggtggatcagga
agtggaaaaacgagattttatgtaaaaccgaaccttatgcagatgcactcgtcatattgt
gtgaccgatcctaaaggaactatagtccttgagtgcggtaagatgcttgaagataacgga
tatgagataaaaatcctaaataccattaacttcaaaaagtctatgaaatacaatcccttt
gcttatcttagaagtgaaaaggacatactcaaattagtacagacaattatcgcaaacacc
aagggagagggagaaaaatcaggtgaagatttttgggtgaaagctgagaaactctactat
acagcacttattggctatatcttctatgaagctccaagagaagaaaagaactttgcaact
ctgcttgatatgattgatgcttcagaagtcagagaagataatgaaacctatatgaatccg
atagataggctctttgaagcactggagaagaaagaacctacacactttgcagtgaagcaa
tataaaaagtacaaattggctgcgggaaaaactgccaaatcgattcttatttcttgtggt
gcaagacttgctccctttgatattcaggaacttagggacttgatgagtgacgatgaactt
gagcttgatacactgggagatagaaaaacagcactatttgttattatctccgataccgat
gatacatttaactttgtagtatccattatgtactcacagttatttaatcttttatgtgat
aaagccgatgatgtatatggcggacgattacctgtccatgtgaggtgtctacttgatgag
ttcgctaatatcggcttaattcctaagtttgagaagttaattgcaacaatccgttcaaga
gagatttcagcaagtatcatacttcaagcacaatctcagctaaaggcaatctacaaggat
aacgctgatacaatcgtaggtaactgtgatagtaccttgtttcttggtggcaaggagaaa
actacgctaaaagaattgtctgaaacactgggaaaagaaactatcgacctgtataacacg
tcggaaacaaggtcaaatcaaaagagctttggtttaaactatcaaaagactggtaaggat
atgccatacttgttcgtgaagagttcagttgccttgaatttcacatga
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