Clostridioides difficile R20291: CDR20291_3032
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Entry
CDR20291_3032 CDS
T00998
Symbol
glnF
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cdl
Clostridioides difficile R20291
Pathway
cdl02020
Two-component system
cdl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cdl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CDR20291_3032 (glnF)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CDR20291_3032 (glnF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdl03021
]
CDR20291_3032 (glnF)
Transcription machinery [BR:
cdl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CDR20291_3032 (glnF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
EspA
CEP76_N
HTH_21
Arg_repressor
FliG_N
DUF7776
Motif
Other DBs
NCBI-ProteinID:
CBE06794
UniProt:
A0A9R0BN04
LinkDB
All DBs
Position
complement(3616380..3617726)
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AA seq
448 aa
AA seq
DB search
MNFNNSLELTQSQKLIMTTQLKQSLSILNMSKLELEEEIKREAENNPLVEVEKSGEINWE
EYIKDMDRSRRLDRTEISYNPDNEVNLENLVKYSSNLYEDLKFQISLYKLTDKELEVCEY
IIDSLDEDGYLRTEEKVIVDTLKIDEELFEKCLISVQQLEPSGVGARSLSECLMIQMASL
GIYNEILEEIVTKDLNLIANNKYKEISKKYNMSLQKCVELINIIKTLDPKPGRTCSVEKS
VYIQPDVTVEKIDDEFIVYLNEKDSYQIRINSYYKDILKNSQSDESAKEFIKERLNSATG
LMKNIESRKTTVLKIAEEIVKAQDEFLRKGTKYIKPLKMKDIAEKLEFHESTISRGVNGK
YMLTPFGVYEFRYFFSSAIETENNEMASSTSIKKIIKETIKDENKKKPLSDDHISKLLKE
KGINVARRTVAKYREELGIPSSSKRKEY
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaataatagtctagaattaactcagtctcagaagctaataatgactacacaa
cttaagcaatcattatcaatattaaatatgagtaagttagagttagaagaagagataaaa
agagaagcagagaataacccattagttgaagtcgagaaaagtggggagataaattgggaa
gagtatataaaagacatggataggtcaagacgtttagatagaacagagataagctataat
cctgataatgaagttaatctagaaaatttagttaaatattcgtcaaatttatatgaagat
ttaaaatttcagataagcctgtataaacttacagacaaagaattggaagtctgtgagtat
ataattgatagtttagatgaggatggatatttaagaactgaggaaaaagtaattgttgat
accttaaagatagatgaagaactttttgaaaaatgtttaattagtgttcagcagttggaa
cctagtggagtaggggcaagaagtctttcagaatgtctgatgatacaaatggctagttta
ggaatatataatgaaattttagaggaaatcgttacaaaagacttaaatttaattgcaaat
aataaatataaagagataagtaaaaagtacaatatgtcattacaaaaatgtgttgaacta
ataaacataattaagacattagaccccaaaccaggaagaacttgttcagtagagaaaagt
gtatacattcaacctgatgtaacagtagaaaagattgatgatgaatttattgtatattta
aatgagaaagattcttaccaaataagaatcaatagttattataaagacatattaaaaaat
tcacagtctgatgaaagtgcaaaagaatttataaaagaaagactaaattcagcaacagga
cttatgaaaaatatagagagtaggaaaactacagtacttaagattgcagaagagatagta
aaagctcaagatgaatttttgagaaaagggacaaaatatataaaacctttgaaaatgaaa
gacatagcagaaaaattagaatttcatgaatctactataagtagaggtgtaaatggtaaa
tatatgctaacaccttttggcgtatatgaatttaggtactttttcagtagcgccattgag
actgagaataatgaaatggcatctagtacaagcataaaaaaaattataaaggaaacaata
aaagacgaaaataaaaagaaacctttaagtgatgaccatatatctaagttattaaaagaa
aaaggaatcaatgttgcaagaaggacagttgccaaatatcgtgaagaattaggaatccca
tcttcaagtaagagaaaagaatactaa
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