Cronobacter dublinensis: AFK67_01380
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Entry
AFK67_01380 CDS
T04061
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cdm
Cronobacter dublinensis
Pathway
cdm03420
Nucleotide excision repair
cdm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFK67_01380 (uvrD)
03430 Mismatch repair
AFK67_01380 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdm03400
]
AFK67_01380 (uvrD)
Enzymes [BR:
cdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFK67_01380 (uvrD)
DNA repair and recombination proteins [BR:
cdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFK67_01380 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AFK67_01380 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALB65204
LinkDB
All DBs
Position
296436..298598
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AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINGKKDEGLRPHHIESYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNGIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFQGAQTIRLEQNYRSTNNILNAANALIANN
AGRLGKELWTDGSDGEPISLYCAFNELDEARFVVNRIKVWQENGGALQDCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQACRQLLQEKALAGRAASALQRFLELVDALAHDTIDMPLHVQ
TDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADAWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEAYHRPSRFIAELPEGCVEEVRLRASVSRPVSHKQLG
APVAQNDSGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFNGQGIKWLVAAYARLENV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaacgataaacagcgcgaagccgtagccgcg
ccgcgcagcaatatgctggtgctggcaggtgcaggcagcggtaagacgcgcgtgctggtg
catcgtatcgcctggctgatgatggtagaaaactgttcgccgtactccatcatggcggtg
acctttaccaacaaagcggcggcggagatgcgtcatcgtatcggccagctgatgggcacc
agccagggcggcatgtgggtcggcacgttccacggcctcgcccaccgtctgctgcgcgcg
caccatatggacgcgaatctcccccaggatttccagatcctcgacagcgacgatcagctg
cgtctgctcaagcgtcttatcaaggcgatgaatctggacgagaagcagtggccgccgcgc
caggcgatgtggtacatcaacggcaaaaaagatgagggcctgcgcccgcaccatatcgag
agctacggcaacccggtagagcagacctggcagaaggtctatcaggcataccaggaggcg
tgcgaccgcgcaggcctggtggatttcgccgaactgctgctgcgcgcccatgagctgtgg
ctcaacaaaccgcatatccttaaccactaccgagagcgcttcaccaatattctggtggat
gagtttcaggacaccaacggcattcagtacgcctggatccgcctgctggcgggcgacacc
ggcaaggtcatgattgtcggcgacgatgaccagtcgatttacggctggcgcggcgcgcag
gtcgaaaacatccagcgcttcctgaacgatttccagggcgcgcagactattcgtctggag
cagaactaccgctccaccaacaatattctcaacgccgccaacgcccttatcgccaataac
gccggtcgcctcggcaaagagctgtggaccgacggcagcgacggcgagcctatttccctt
tactgcgcgttcaacgagctggacgaagcgcgctttgtggtgaaccgcatcaaggtgtgg
caggagaacggcggtgcgctgcaagactgcgccattctgtatcgcagcaacgcccagtcg
cgcgtgctggaagaggcgctgttgcaggcgagcatgccgtaccgtatctacggcggcatg
cgattcttcgaacgccaggagatcaaagacgcgctggcgtacctgcgtcttatcgccaac
cgcaacgacgatgcggccttcgagcgcgtggtgaatacgccgacgcgcggcattggcgat
cgcacgctggatgtggtgcgccagaccgcgcgcgaccgccagctcacgctctggcaggcg
tgccgtcagctgttgcaggaaaaagcgctggccggacgcgccgccagcgcgcttcagcgc
ttccttgagcttgtcgacgcgctggcgcatgacaccatcgatatgccgctgcatgtccag
accgaccgggtcatcaaagactccggcctgtggctgatgtatgagcaggaaaaaggcgag
aaaggccaggcgcgtatcgaaaacttagaggaactggtgacggcgacgcgccagttcagc
tacaacgaagaagacgaagatttaatgccgctgcaggcatttttgtcccacgcggcgctg
gaagcgggcgaagggcaggccgacgcctggcaggacgcggtgcagctgatgacgctgcac
tccgccaaagggctggagtttccgcaggtgtttatcgtcgggatggaagaggggatgttc
ccaagccagatgtcgcttgatgagggtggacgtctggaagaggagcgtcgcctggcctac
gtgggcgttacccgcgccatgcagaagctgacgctgacctacgctgaaacccgtcgcctg
tatggcaaagaggcgtatcaccgaccttcgcgttttatcgccgagctgccggaaggctgc
gtggaagaggtgcgcctgcgcgcgagcgtcagccgcccggtcagccataagcagctgggc
gcgccggtggcgcagaatgattccggctacaagctcggccagcgcgtgcgccacccgaaa
ttcggcgaaggcacgattgtgaatctcgaaggcagcggcgaacacagccgtctgcaggtg
gcgttcaacgggcagggcatcaaatggctggtggccgcctatgcgcgcctcgaaaacgtc
tga
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