Cronobacter dublinensis: AFK67_01415
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Entry
AFK67_01415 CDS
T04061
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cdm
Cronobacter dublinensis
Pathway
cdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK67_01415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdm03019
]
AFK67_01415
03400 DNA repair and recombination proteins [BR:
cdm03400
]
AFK67_01415
Enzymes [BR:
cdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFK67_01415
Messenger RNA biogenesis [BR:
cdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFK67_01415
DNA repair and recombination proteins [BR:
cdm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFK67_01415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF6972
Motif
Other DBs
NCBI-ProteinID:
ALB65211
LinkDB
All DBs
Position
303650..305479
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIP
ALVKTGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRSGQVRLLY
IAPERLMMDNFIDSLSYWNLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMAL
TATADDTTRRDIVRLLGLEDPLIEISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKAPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQAPCGNCDICLDPPRRYDGLVDAQKAL
SAIARVEQRFGMGYVVEVLRGANNQRIRELGHDKLKVYGIGRDQSQEHWVSVIRQLIHLG
VVMQNIAQHSALQLTEAARPFLRGEAPLMLAVPRVAALKPRVAQKSYGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLGINGVGTRKLERFGRPFMTLIR
EHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtttacagtcaggaaacgctggctaagcaggttttacaggaaacc
tttggctatcagcagttccgtccaggccaggccaccattatcgacgcggtgcttgaaggg
cgcgactgcctggtggtgatgcccaccggtggcggcaaatcgctgtgttatcaaatcccg
gcgctggtgaaaaccggtctgaccgtggtggtttctccgcttatttccttaatgaaagat
caggtcgatcagctgctcgcgaacggcgtggcggcggcgtgcctgaactcgacgcagagc
cgcgacgagcagcaggccgtgatggcgggctgtcgtagcgggcaggtgcgtctgctgtat
atcgcaccggaaaggctgatgatggataacttcatcgatagcctgagctactggaacctg
gcgatggtcgcggtggacgaggcgcactgcatttcgcagtggggccacgatttccgcccg
gaatacgcggcgctcggccagcttcgcgcgcgcttcccggcggtgccctttatggcgctc
accgccacggcggacgacaccacgcggcgcgatatcgtacgcctgctgggccttgaggat
ccgctgattgaaatcagcagctttgaccggccgaatatccgctacatgctgatggagaaa
ttcaaaccgctcgatcagctgatgcgttatgtccaggaacagcgcggtaaatcgggcatc
atctactgcaacagccgcgcgaaagtagaagacaccgccgcgcgtctgcaaagccgcggc
atcagcgccgccgcctaccacgcagggcttgagcacgaggtacgcgcctcggtacaggaa
aaattccagcgcgacgacttacaaatcgtcgtggcgaccgtggcgttcggcatgggcatc
aacaagcccaacgtgcgctttgtggtgcacttcgatattccccgcaatatcgaatcttac
tatcaggagacgggccgcgccgggcgcgacggcctgcctgctgaagcgatgctgttttac
gatccggcggacatggcctggctacgccgctgcctggaagaaaaagcgcccggcccgctt
caggatatcgagcgccataagcttaacgcgatgggcgcgttcgccgaggcgcaaacctgc
cgccgtctggtgctgctcaattacttcggcgaagggcgccaggcgccgtgcggcaactgc
gatatctgtctcgatccgccgcgccgctatgacgggctggtggacgcgcagaaagcgctg
tcggctatcgcgcgcgtcgagcagcgctttggtatgggatatgtggtggaagtgctgcgc
ggggcgaataaccagcgcatccgcgagctcgggcacgacaaactcaaggtgtacggcatc
gggcgcgatcaaagccaggagcactgggtcagcgttatccgtcagctcattcatctgggc
gtggtgatgcagaatatcgcgcagcactcggcgctccagctcaccgaagcggcgcgtccg
ttcctgcgcggcgaagccccgctgatgctggcggtaccgcgcgtggcggccctgaaaccg
cgcgtggcgcagaaatcctacggcggcaattacgaccgtaagctgttcgccaaactgcgc
aaactgcgtaaagccatcgccgatgaagagaatattccgccgtatgtcgtctttaacgac
gcgacgctgattgaaatggccgagcagatgccgctcagccctggcgaaatgctcggtatt
aacggcgtcggcacccgcaaactggagcgcttcggcaggccgtttatgacgctcattcgc
gagcacgtagacggcgacgacgaagagtag
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