Cronobacter dublinensis: AFK67_06650
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Entry
AFK67_06650 CDS
T04061
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cdm
Cronobacter dublinensis
Pathway
cdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK67_06650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdm03019
]
AFK67_06650
Enzymes [BR:
cdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFK67_06650
Messenger RNA biogenesis [BR:
cdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFK67_06650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
DUF6426
Motif
Other DBs
NCBI-ProteinID:
ALB66168
LinkDB
All DBs
Position
1446245..1447651
Genome browser
AA seq
468 aa
AA seq
DB search
MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL
QRLTTSQPHPQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALAEKLLRNPEEVAVARRNTASGQVTQHVHFVDKKRKRELLSYLI
GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLV
ATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERVLKREIPRMAIPGYEPDPSIPAEPIVNGRQGGRGGRGGQGGGGRSQGQPRRQDGEGNR
PSGERSRRQGGEGNRPSGDRPRRPGGESNRPAGAKPRTRRAPRKASGE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcactgggcttaagccctgagatcctgcgcgccattgccgagcagggt
tacaatgaaccgactccgatccaacgccaggccattccggttgtgctttcaggcaaagat
ttgatggccagtgcccagaccggcaccggcaaaaccgcaggcttcacgctgccgctgctg
cagcgcctgaccaccagtcagccgcacccgcagggccgtcgcccggtgcgcgcgctgatc
ctgaccccgacgcgcgaactggcagcccaggtaggcgagaacgtgcgcgaatacagcaaa
tatctcgatatccgctcgctggtggtatttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtggatgtgcttatcgccacccctggccgtctgctggatcttgaa
caccagaacgcggtgaaactcgaccaggtcgaagtgctggtgctcgacgaagccgaccgc
atgctcgacatgggctttattcacgacattcgccgcgtgctggcgaagctgccggcgaag
cgtcagaacctgctgttctccgcgaccttctccgacgacatcaaagcgctggcggaaaaa
ctgctgcgcaacccggaagaagtggccgtggcacgccgcaacaccgcctccgggcaggtg
acgcagcatgtgcatttcgttgataaaaaacgcaagcgggaactgctttcttacctgatt
ggcgatggcaactggcagcaggtgctggtatttacccgtaccaaacatggcgctaaccat
cttgccgagcagctgaacaaagacggcatcaccgccgcggctatccacggcaacaagagc
cagggcgcccgtacccgcgcgctggcggacttcaaaaccggcggcattcgcgtgctggtg
gcgaccgatatcgccgcgcgcggtattgatatcgaagagctgccgcacgtagtgaactat
gagctgccgaacgtgccggaagattacgttcaccgtatcggccgtaccgggcgtgctgcc
gcgaccggcgaggcgctctcgctggtgtgcgtcgacgagcacaaactgctgcgcgatatc
gaacgtgtgctgaagcgcgaaattccgcgtatggctatcccgggctacgagccagacccg
tctatcccggcggagcctatcgttaacggtcggcagggcggtcgtggcggacgtggtggt
cagggcggcggtggtcgtagtcagggccagccgcgtcgtcaggatggcgaaggtaatcgt
ccgtcaggtgagcgttcgcgtcgtcagggcggtgaaggcaatcgtccgtcaggcgaccgt
ccgcgtcgtccgggcggcgagagcaaccgtccggcaggcgcgaagccgcgcacccgtcgc
gcgccgcgtaaggcgtccggggagtaa
DBGET
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