Cronobacter dublinensis: AFK67_18020
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Entry
AFK67_18020 CDS
T04061
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cdm
Cronobacter dublinensis
Pathway
cdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK67_18020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdm03019
]
AFK67_18020
03016 Transfer RNA biogenesis [BR:
cdm03016
]
AFK67_18020
Enzymes [BR:
cdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AFK67_18020
Messenger RNA biogenesis [BR:
cdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFK67_18020
Transfer RNA biogenesis [BR:
cdm03016
]
Prokaryotic type
tRNA degradation factors
AFK67_18020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ALB68274
LinkDB
All DBs
Position
complement(3890121..3892592)
Genome browser
AA seq
823 aa
AA seq
DB search
MSQDPFQEREAEKYTNPIPSREFILEHLTKREKPANRDELANELGIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDDEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEELRSQYQPLVKHLEELHHLYKALDEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGSKPEPRDYAELLNSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHEGHTTESG
GCHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLADLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGGGGKNRSRRQVGKRQNFEPNDAFRNEKVRGKVK
KDGVARAEKSDKPAKSSKKPSEKTAKIPAATKAKRAAKKKRDS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccttttcaggaacgagaagctgagaagtacaccaatcccatcccgagc
cgggaatttatcctcgagcatttaacaaaacgtgaaaaaccggctaaccgcgatgaactg
gcaaacgaactcggcattgaaggcgaagagcagcaggaagcgctgcgccgccgcctgcgc
gcgatggagcgcgacggccagctcgtctttacccgccgccagtgctacgcgctgccggaa
cgtctcgatctgcaaaaaggcaccgtgatcggccaccgcgacggttacggttttttgcgc
gtcgaagggcgtaaagacgatctgtatctctcttcagagcagatgaaaacctgcattcac
ggcgatatcgtgctggcgcagccgctcggatcggatcgtaaaggccgccgcgaagcgcgc
atcgtgcgcgtgctggtgccaaagcagagcaatatcgtcggccgctatttcacggacgcc
ggtgtcggctttgtggtgccggacgacagccgcctgagctttgatattctcatcccgccg
gaagagattatgggcgcccgcatgggctacgtcgtggtcgtcgagctgacccagcgtccg
acccgccgcaccaaagccatcggtaaaatcgtcgaagtactcggcgataacatgggcacc
ggcatggccgtggatatggcgctgcgcacccatgaaattccctacgtctggccgaaagcc
gtcgaagagcagattgcgcacctgaaagaagaggtgccggaagaggcgaaggtcggacgc
gtcgatttgcgcgacctgccgctcgtcaccattgatggcgaagacgcccgcgactttgac
gacgccgttttctgcgagaagaaacgcggcggcggctggcgcctgtgggtcgccattgcg
gacgtcagctactacgtgcgtccgccgacgccgctcgatgacgaagcgcgcaatcgcggc
acgtcggtctacttcccctcgcaggtcgtcccgatgctgccggaagtgctctccaacggc
ctctgctcgctcaatccgcaggttgaccgcctctgtatggtctgtgagatgactatctcc
gccaaaggccgcctgacgggctataaattctatgaagcggtcatgagctcgcacgcgcgt
ctcacctataccaaggtgtggcacatcctgcagggcgatgaagaactgcgcagccagtat
cagccgctggtgaaacatctcgaagagctgcatcatctttataaagcgctggatgaagcg
cgtaccgagcgcggtggcatctcgtttgagagcgaagaggcgaagtttatcttcaacgcc
gagcgtcgcatcgatcgcatcgaacagacccagcgtaacgatgctcacaagctcatcgaa
gagtgcatgatcctcgccaacatttcggcggcgcgctttgtcgagaagcacaaagagccg
gcgctgttccgtattcacgatcgtccgaccaacgaagcgattacctcgttccgttcggtg
ctggcggagctgggcctggaactgccgggcggcagcaagccggagccgcgcgactacgcc
gagttgctgaattccatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgcggccactttggcctggcgctg
caatcctacgcgcactttacctcgcctatccgccgctacccggatcttacgctgcaccgc
gcgattaaatatctgctggcgaaagagcagggccatgaaggccacaccaccgaaagcggc
ggttgccactacaccatggaagagatgctgcaacttggccagcactgctccatgaccgag
cgccgcgccgatgaagcgacccgcgaagtggcggactggctcaaatgcgacttcatgcag
gaccaggtcggacagactttctccggggtcatctccagcgtgaccggctttggcttcttt
gtgcgcctcgcggacctctttatcgatggtctggtgcatgtctcctcgctcgacaacgac
tactaccgtttcgatcaggtcggccagcggttgatcggcgaatctggcggccagacgtac
cgtctgggcgatcgcgtcgaagtgaaagtcgaagccgtgaacatggatgagcgtaaaatc
gacttctcgctgatctccagcgaacgcgggccgcgtaacgtcggcaaaaccgcgcgcgag
cgtgagaaaagaggcggcggtggcggcggcaaaaaccgcagccgtcgtcaggtcggcaag
cgccagaatttcgaacctaacgacgcttttcgtaacgagaaagtccgtggaaaggtgaag
aaagacggcgtcgcacgcgctgagaagagtgacaaaccggcgaaaagcagtaaaaaaccg
tcggagaaaaccgctaaaatccccgccgccacgaaagcgaagcgcgcggcgaagaaaaag
cgcgacagctaa
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