Cronobacter dublinensis: AFK67_18570
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Entry
AFK67_18570 CDS
T04061
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cdm
Cronobacter dublinensis
Brite
KEGG Orthology (KO) [BR:
cdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cdm03016
]
AFK67_18570
Enzymes [BR:
cdm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AFK67_18570
Transfer RNA biogenesis [BR:
cdm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AFK67_18570
Prokaryotic type
tRNA splicing ligases
AFK67_18570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ALB68372
LinkDB
All DBs
Position
complement(4011296..4012522)
Genome browser
AA seq
408 aa
AA seq
DB search
MSENHYQTLAQANGAPVKMWTHGVPVEPEAREQLLKTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLVARDLPDNLSGLRSAIERAVPHGRNVGHG
KRDHGSWSNTPQDVDNHWATLAPRFKRLTDKYPNLLKTNNHQHLGTLGTGNHFIEICLDE
QERVWVMLHSGSRGVGNAIGTHFIGLAQKDMQRHIANLPDRDLAYFEEGSKHYADYIEAV
EWAQDFARQNREVMMNRVLAALSAIITKPFMTQQEAVNCHHNYVQKETHFGEEILVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIEAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaaccactatcagacgctggcgcaggctaacggcgcaccggtaaaaatgtgg
acgcacggcgtgccggtagagccggaagcgcgcgagcaactcctgaaaacggcgaagatg
ccttttatctttaaacatctggcggtgatgccggatgtgcatctggggaaaggctcgacc
atcggcagtgtgatcccgaccaaaggggcgattatcccggcggcggtgggtgtcgatatc
ggctgcgggatgatcgcggtacgcacctcgcttgtcgcgcgcgatctgccggataacctg
agcgggctgcgcagcgctatcgaacgggccgtgccgcacgggcgtaacgtcggccacggt
aagcgcgatcacgggtcgtggtcgaacacgccgcaggatgtggataaccactgggcgacg
ctcgcgccgcgctttaagcgcctgaccgataaataccccaacctgctgaaaactaataac
catcagcacctgggaacgctcggtaccggtaaccactttatcgaaatctgtcttgatgag
caggagcgcgtctgggtgatgctgcacagcgggtcgcgcggcgtgggtaacgccatcggc
acgcactttatcgggcttgcccagaaagatatgcagcgccatatcgctaatttgcctgac
cgcgacctcgcgtattttgaagagggaagcaaacactacgccgattacatcgaggcggta
gagtgggcgcaggatttcgcccgtcagaaccgtgaagtgatgatgaatcgcgtgctggcc
gcgctgtccgccatcatcacgaagccgtttatgacgcagcaggaggccgtgaactgccac
cataactacgtgcagaaggagacgcactttggtgaggagattctggtcacgcgtaaaggc
gcggtgtcggcgcagaaagggcagatggggatcatcccaggctcgatgggcgcgaaaagc
tttatcgtgcgcgggctgggtaatgaagagagcttctgctcatgcagccacggcgccggg
cgtaccatgagccgtaccgcggcgaaaaaacgcttcacggtggaagatcagatccgcgcc
acggcgcacgtggagtgccgtaaagacagtgacgtcattgacgaaatcccgatggcgtat
aaagacatcgaggccgtgatggccgcccagtcatcgctggtggaaattgtgcatacgctg
cgtcaggtcgtgtgcgttaagggataa
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