Cronobacter dublinensis: AFK67_20240
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Entry
AFK67_20240 CDS
T04061
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cdm
Cronobacter dublinensis
Pathway
cdm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFK67_20240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdm03400
]
AFK67_20240
Enzymes [BR:
cdm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AFK67_20240
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AFK67_20240
DNA repair and recombination proteins [BR:
cdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AFK67_20240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALB68688
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All DBs
Position
complement(4360519..4361328)
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AA seq
269 aa
AA seq
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MPELPEVETSRRGIEPHLVGETILHAVVRNSRLRWPVSDEIHALSDKPVISVQRRAKYLL
LELPDGWIIIHLGMSGSLRILPEERPAEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTREL
EGHNVLAHLGPEPLSEAFNGAYLHQKCVKKKVAIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRLASSLSENECELLAQAIKAVLLRSIEQGGTTLRDFLQSDGKPGYFAQQLQVYGRE
GEPCRVCGAPIQAGKHAQRRTYWCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggtggaaaccagccgtcgcgggattgaaccgcatctggttggc
gaaaccatactgcacgccgttgtgcgcaacagccgcctgcgctggccggtttccgatgaa
atccatgcgttaagcgacaaacccgtgatcagcgtgcagcgtcgcgccaaatatcttctg
ctggagctgccggacggctggataatcatccatcttgggatgtccggcagcctgcgtatc
ctcccggaagagcgtccggccgagaagcacgaccacgtcgacctggtgatgagcaatggc
aaagtgctgcgctacaccgatccccgccgcttcggcgcctggctgtggacgcgcgagctg
gaagggcacaatgtgctggcgcatctggggccggagccgcttagcgaggcgtttaacggc
gcgtatctccatcaaaaatgcgtgaagaagaaggtcgcgattaagccctggctgatggat
aacaagctggtggtgggcgtcggtaatatctacgccagcgagtcgctgtttgccgccggg
atccaccccgatcggctggcctcgtcgctgtcggaaaacgagtgtgaactgctggcgcag
gcgatcaaagcggtgctgttgcgatcgattgagcagggtggcacgacgctgcgcgatttc
ctgcaaagcgacggcaagccgggctattttgcgcagcagctgcaggtgtacgggcgtgaa
ggcgaaccgtgccgggtctgcggcgcgccgattcaggcagggaaacatgctcagcgccgc
acctactggtgccgacgctgtcagaagtga
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