Castellaniella defragrans: BN940_00441
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Entry
BN940_00441 CDS
T03058
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN940_00441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdn03021
]
BN940_00441
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_00441
Enzymes [BR:
cdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN940_00441
Transcription machinery [BR:
cdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN940_00441
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN940_00441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
CDM22569
UniProt:
W8WSR9
LinkDB
All DBs
Position
complement(103753..104751)
Genome browser
AA seq
332 aa
AA seq
DB search
MSAQGFLKPRTISVETLGAHHAKVVMEPFERGYGHTLGNALRRILLSSMSGYAPTEVQIS
GVVHEYSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLQLNKQGPGEVRARDIELPHDVE
IINPDHLIATLTDNGRLEMQIKVEQGRGYVPGNVRALVDDRSATIGQIVLDASFSPVRRV
SYAVENARVEQRTDLDKLVLDVQTNGVISPEEAVRQSARILMDQISVFVSLADKDAGQLT
TSISSTGTSAPIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGR
KSLNEIKEVLAARGLTLGMKLENWPPVGLERP
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcacaaggttttctgaaaccccgcaccatctccgtcgaaaccctgggcgcgcat
cacgccaaggtcgtgatggagcccttcgagcgcggctacggccacacgctgggcaacgcc
ctgcgccgcatcctgctgtcctccatgtcgggctacgcccccacggaagtccagatcagc
ggggtggtgcacgaatactccacgatcgccggggtgcgcgaggacgtcgtcgacatcctc
ctgaacctcaagggcgtggtgttcaagctgcacaaccgcgacgaagtcacgctgcagctc
aacaagcagggccccggtgaagtccgcgcccgcgacatcgaactgccgcacgacgtcgag
atcatcaatccggaccacctgatcgccaccctgacggacaacggccgcctggaaatgcag
atcaaggtcgagcagggccgcggctacgtgccgggcaacgtgcgcgccctggtggacgac
cgttcggccaccatcggccagatcgtgctggatgcctccttcagccccgtgcgccgcgtc
agctacgccgtggaaaacgcccgcgtcgagcagcgcaccgacctggacaagctggtgctg
gacgtgcagaccaacggcgtcatcagtcccgaggaagccgtgcgccagtcggcccgcatc
ctgatggaccagatctccgtgttcgtgtcgctggccgacaaggacgccggccagctgacc
accagcatctcctcgaccggcacgtcggcgccgatcgatccggtgctgctgcgcccggtc
gacgacctggagctgacggtgcgttcggccaactgcctgaaggccgaaaacatctactac
atcggcgacctgatccagcgcacggaaaacgagctgctcaagactccgaacctgggccgc
aagtcgctcaacgagatcaaggaagtcctggccgcgcgtggcctgaccctgggcatgaag
ctggaaaactggccgcccgtcggcctcgaacgcccctga
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