Castellaniella defragrans: BN940_00761
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Entry
BN940_00761 CDS
T03058
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN940_00761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdn03021
]
BN940_00761
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_00761
Enzymes [BR:
cdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN940_00761
Transcription machinery [BR:
cdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN940_00761
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN940_00761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CDM22633
UniProt:
W8WSH7
LinkDB
All DBs
Position
complement(158919..163181)
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIRIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDYLAKTEEYGDDFHALM
GAEAVRELLRNIDIDSEVEKLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKPDWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LRLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPAIVPSQDIVLGLYYATRERINGKGEGMFLADLAEVQRAYDNH
EVELQTRITTRLPEYVKDENGEWKAVVGRFQTTVGRALLSEILPHGLPFAVLNKALKKKE
ISRLINLSYRRCGLRATVIFADKLMQAGFRLATRGGVSIAMGDMVVPDVKGEILAQASKE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLSTEPVIDRHGKETRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSHGYVMKALVEGGEVIEPLRDRVL
GRVTATDIVNPDTQETVIPAGTLLDENLVELLDEVGVDEVKIRTPLTCETRHGLCAHCYG
RDLGRGSLVSKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAMASSVETKSAGTVGF
AIGLRYLTNAKGDRIAVSRSGEIVIYDDNRRERERHKVPYGATIAVGDGDVVKAGAKLAT
WDPLTRPIVSEYTGTIRFANIEEGVTVARQVDEITGLSTLVVITPKTRGTKGAAARPQIL
LLDEQGQEIKVAGTDHAVAISLPVGALITVRDGQSVGVGDFLARIPQESQKTRDITGGLP
RVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDMDGVSHEFLISKEKQVLVHD
GQVVNKGELIVDGPADPHDILRLQGIEPLASYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRRVNITNSGDTSFITGEQVERSELLNENDRMDAEGKIPATYENVLLGITKASLSTDSFI
SAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMSYHIARHEKEAFEAAER
AAARELANPFGEPSEMAHVGSGDADPDADASADGEGSAEE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctcttcaagcaagtctcccaggacgagcaattcgacgccatc
cgcatcgggatcgcctcgccggaaaagatccgttcgtggtccttcggcgaagtgcgcaag
cccgagaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaggtcaccgtggccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccggtggcgcacatctggttcctgaagtccctg
ccctcgcgcctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctctac
ttcgaggcctggtgcgtgatcgagccgggcatgacgccgctcaagcgcggccagatcatg
tccgacgacgactacctggccaagaccgaggaatacggcgacgacttccacgccctgatg
ggcgccgaggccgtgcgtgaactgctgcgcaacatcgacatcgattccgaggtcgagaaa
ctgcgcgcggaactcaaggccacgggctcggatgccaagatcaagaagatctccaagcgc
ctgaaggtcctggaaggcttccagaagtccggcatcaagcccgactggatgatcatggaa
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggcgggcgcttc
gccacgtccgacctgaacgacctctaccgccgcgtcatcaaccgcaacaaccgcctgaag
cgcctgctggaactgaaggcgccggacatcatcctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgattcgctgctggacaacggccgccgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggccgcttccgccag
aacctgctgggcaagcgcgtcgactactccggccgttccgtgatcgtggtgggcccgcag
ctgcgcctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagcccttc
atcttcaaccgcctggaaatgatgggcctggccaccaccatcaaggcggccaagaagctg
gtcgagagccaggagccggtggtctgggacatcctcgaagaggtcatccgcgaacacccg
gtgatgctcaaccgcgcgcccacgctgcaccgcctgggcatccaggccttcgagccgcaa
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgcccctgtcgctggaagcccagctggaagcc
cgcaccctgatgctggcctccaacaacgtcctgttcccggccaacggcgaaccggccatc
gtgccgtcccaggacatcgtgctgggcctgtactacgccacgcgcgagcgcatcaacggc
aagggcgagggcatgttcctggccgacctggccgaggtgcagcgcgcctacgacaaccac
gaagtcgagctgcagacgcgcatcaccacccgcctgcccgagtacgtcaaggacgagaac
ggcgaatggaaggccgtggtcggccgcttccagaccaccgtgggccgcgccctgctgtcc
gagatcctgccccatggcctgcccttcgcggtgctgaacaaggcgctgaagaagaaggaa
atctcgcgcctgatcaacctgtcctaccgccgctgcggcctgcgcgccacggtgatcttc
gccgacaagctgatgcaggcgggcttccgcctggccacgcgcggcggcgtgtcgatcgcc
atgggcgacatggtcgtgcccgacgtcaagggcgaaatcctggcccaggcctcgaaagag
gtcaaggaaatcgacaagcagtattcctccggcctggtcacggcgcaggaacgctacaac
aacgtggtggacatctggggcaaggccggcgaccgcgtcggcaaggccatgatggagcag
ctctccaccgagccggtcatcgaccgccacggcaaggaaacccgccaggaatcgttcaac
tccatctacatgatggccgattccggggcccggggctccgccgcccagatccgccagctg
gcggggatgcgcggcctgatggccaagcccgacggctccatcatcgagacccccatcacg
gcgaacttccgtgaaggcctgaacgtgctgcagtacttcatctcgacccacggcgcgcgc
aagggtctggccgacaccgccctgaagaccgccaactcgggctacctgacccgccgcctg
gtggacgtgacccaggacctggtcatcaccgaggacgattgcggcacctcgcacggctac
gtgatgaaggccctggtggaaggcggcgaagtcatcgagccgctgcgcgaccgcgtgctg
ggccgcgtcacggccaccgacatcgtcaatcccgacacccaggaaaccgtcatcccggcc
ggcaccctgctggacgaaaacctggtcgagctgctcgacgaagtgggcgtggacgaggtc
aagatccgcactccgctcacctgcgagacccgccacggcctgtgcgcgcactgctacggc
cgcgacctgggtcgcggttcgctggtcagcaagggcgaggccgtgggcgtcatcgccgcg
cagtccatcggcgaaccgggcacgcagctgacgatgcggaccttccacatcggcggcgcc
gcctcgcgctcggccatggccagctcggtcgagaccaagtccgccggcacggtgggcttc
gccatcggcctgcgctacctgaccaacgccaagggcgaccgcatcgccgtgtcccgctcc
ggcgagatcgtcatctatgacgacaaccgccgcgagcgcgaacgccacaaggtgccctac
ggcgccaccatcgccgtgggcgacggcgacgtggtcaaggccggcgccaagctggccacc
tgggatccgctgacgcgccccatcgtgtcggaatacaccggcacgatccgcttcgccaac
atcgaggaaggcgtcacggtggcgcgccaggtggacgagatcaccggcctgtccacgctg
gtcgtgatcacgcccaagacgcgcggcaccaagggtgccgccgcgcgcccgcagatcctg
ctgctcgacgagcagggccaggaaatcaaggtggccggcaccgaccacgcggtggcgatc
tcgctgcccgtgggcgcgctgatcaccgtgcgcgacggccagtccgtgggcgtgggcgat
ttcctcgcccggattccgcaggaatcccagaagacccgcgacatcaccggcggtctgccg
cgcgtggccgagctgttcgaggcccgttcgcccaaggacgccggcatgctggccgaagtc
accggcacggtttccttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgac
atggacggcgtcagccacgagttcctgatctccaaggaaaagcaggtgctggtgcacgac
ggccaggtggtcaacaagggcgagctgatcgtcgacggtccggccgatccgcacgacatc
ctgcgcctgcagggcatcgagccgctggcctcctacatcgtcaacgaggtccaggacgtc
taccgcctgcaaggggtgaagatcaacgacaagcacatcgaagtgatcgtccgccagatg
ctgcgccgcgtgaacatcaccaactccggcgacaccagcttcatcaccggcgagcaggtc
gagcgctccgagctgctgaacgagaacgaccgcatggacgccgaaggcaagatcccggcc
acgtatgaaaacgtgctgctgggcatcaccaaggcgtccctgtcgaccgattcgttcatc
tcggcggcgtccttccaggaaaccacccgcgtgctgaccgaggccgccatcatgggcaag
cgcgacgagctgcgcggcctgaaggaaaacgtcatcgtgggccgcctgatcccggccggc
acgggcatgtcctaccacatcgcccgccacgagaaggaagccttcgaggccgccgagcgc
gccgcggcccgcgagctggccaatccgttcggcgagccgtccgagatggcccacgtgggc
tccggggacgccgatccggacgccgacgcgtcggccgacggcgaaggctcagccgaagag
tga
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integrated database retrieval system
