Castellaniella defragrans: BN940_01621
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Entry
BN940_01621 CDS
T03058
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN940_01621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdn03019
]
BN940_01621
Enzymes [BR:
cdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN940_01621
Messenger RNA biogenesis [BR:
cdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN940_01621
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDM22801
UniProt:
W8X1M9
LinkDB
All DBs
Position
349239..350708
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AA seq
489 aa
AA seq
DB search
MDTSITFASLGLAEPLLRAVHDAGYTHPTPIQAQAIPRVLEGGDLLAAAQTGTGKTAGFT
LPILHYLLSHPAAAQRPGRPRVLVLTPTRELTAQVEESVRLYGKHTAVRSMVMFGGVNIN
PQIAALKKPLDILVATPGRLLDHAQQKTLDLSGVEILVLDEADRMLDMGFIHDIRRVLKL
LPAKRQNLLFSATFSDEIRGLAQGILRNPGEVSVARRNTASELVSQRVVMTEQAHKRDLL
SHIIRESGWHQVLVFTRTKHGANRLAEKLSKDGLTAAAIHGNKSQAARTKALAGFKDGKV
AVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSTGSALSLVDSSEIKL
LRAIERLIKQTIEPITVEGWNPAMATADSAPDAREKRALARLQSEGFGGRSDGGRRGDGG
RRESSGRDGRRPAPAAAATERRSGPDARRTGGGRAPGGRPAREGGAPQAPRREARPASSG
RPALLHKAD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
ttggatacttcgattacctttgcctcgctcggcctggcggaacccctgctgcgcgccgtc
cacgacgcgggctacacccaccccacgccaatccaggcccaggccatcccgcgcgtgctg
gaaggcggcgacctgctggccgccgcgcagaccggcacgggcaagaccgccggcttcacg
ctgccgatcctgcactacctgctgagccatcccgccgccgcccagcgcccgggccggccc
cgcgtgctggtcctgaccccgacgcgcgaactgactgcccaggtcgaggaatccgtgcgc
ctgtacggcaagcacacggccgtgcgctcgatggtgatgttcggcggggtcaacatcaat
ccccagatcgcggccctgaaaaagccgctggacatcctggtggccacgccgggccgcctg
ctggaccacgcccagcagaagacgctggacctgtccggcgtcgagatcctggtgctggac
gaggccgaccgcatgctggacatgggcttcatccacgacatccgccgcgtgttgaagctg
ctcccggccaagcgccagaacctgctgttctccgccaccttctccgacgagatccgcggc
ctggcccagggcatcctgcgcaatcccggcgaagtctccgtcgcccggcgcaacaccgcc
tccgagctggtcagccagcgcgtggtgatgaccgagcaggcgcacaagcgcgacctgctc
agccacatcatccgcgagagcggctggcaccaggtgctggtgttcacgcgcaccaagcac
ggtgccaaccgcctggccgaaaagctgtcgaaggacggcctgaccgccgccgccatccac
ggcaacaagagccaggccgcgcgcaccaaggcgctggccggcttcaaggacggcaaggtg
gccgtgctggtggccaccgacatcgccgcccgcggcctggacatcgaccagctgccgcag
gtcgtcaatttcgagctgcccaacgtgcccgaggactacgtgcaccgcatcggccgcacc
ggccgcgccggcagcaccggctccgccctgtcgctggtggattcgtccgagatcaagctg
ctgcgcgccatcgagcgcctgatcaagcagaccatcgaaccgatcaccgtggaaggctgg
aacccggccatggcgaccgccgattccgcgcccgacgcccgggaaaagcgcgccctcgcg
cgccttcagagcgaaggcttcggcggccgcagcgacggcggccggcgcggcgacggcggg
cggcgcgaatcgtccggccgcgacggccgcaggcccgccccggccgcggcggcgaccgag
cggcgctccggcccggacgcccgccgcaccggcggcggccgcgccccgggcggccggccg
gcccgcgaaggcggcgcgccccaggccccgcgccgcgaggcgcgtccggcctcgtccggg
cgtcccgcgctgctgcacaaggccgactga
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