Castellaniella defragrans: BN940_05356
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Entry
BN940_05356 CDS
T03058
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN940_05356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdn03019
]
BN940_05356
03009 Ribosome biogenesis [BR:
cdn03009
]
BN940_05356
Enzymes [BR:
cdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN940_05356
Messenger RNA biogenesis [BR:
cdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN940_05356
Ribosome biogenesis [BR:
cdn03009
]
Prokaryotic type
rRNA processing factors
BN940_05356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CDM23540
UniProt:
W8X8R6
LinkDB
All DBs
Position
complement(1152198..1155359)
Genome browser
AA seq
1053 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSYFKEGVDVRSARIQDALAEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMDQLEIPAGMSMIARTAGIGRGVEELQ
WDLNYLLQLWTAIDAAARENKAPILIYLESSLVIRAIRDYFSPEIGEILIDTDDIHDQAT
AFMSVVMPDNVNRVKRYRDDVPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRSVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHVTCPRCTGTGVIRDAESSALH
VLRLLQEEAMKEGTAALHAQVPVDVATFLLNEKRRDIGQIESRLKVNLVLIPNKSLETPH
HHIERLRHDDPRLDENKTSFELAQEPEDKLVWQPNKAQEAKARPEALVKGIQPAEPAPAH
VERAPRAAEIPAPLPAPAAAAPAAPQGGLLKRLFGWFTGSAAEAEAPAAEPAAPAPSRES
GDGRRRGTTGRNGGRRGERRTDAPRGERTGRGERAERGERTERGDRTERAERPERAERPE
RAERAERPEGRPASRRERPAADAAVPAQADTAVVAEVQDETAEPRRSRSRRGRGRGRTDE
MAVQAGETADLQADELTAPAADAPAAVQAPSENAYGLPDAPRSLPEAEDEDAPVAGPAVD
ADADGDLDSPDPERKRRRRRGRRGRRNGDAADLAATEDASADGDAPTIETHETPRFDPEA
LTAEASAAPASAETTADAPLARPAPTEPARTPVEPAQAQAEAAGEAPARTPVAPVQSPVE
TAPAAEPARVAEAAPAAKPVAQAKPVAEAEPATQAAPVVEAAPAAEPAAQDAAQAEADEA
AAQEAPAAVQAAPAAAPAAPAPAPASVAAAPDASHPIALPSLDESLQAAGMQMVETRSTA
PYVPPAPPKPLGRARKPAARTQDEPLQQVETSH
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcaccaagaagaattacgcgtcgcgattgtcgat
ggccagaaactgatcgacctggacatcgagaccgccgggcgcgagcagcgcaagggcaac
atctacaagggcgtcatcacccgcatcgagccgggactggaagcctgcttcgtcaactac
ggggaagaccgccacggcttcctgcccttcaaggaagtcgcgcgcagctacttcaaggaa
ggcgtggacgtgcgcagcgcccgcatccaggacgccctggccgaaggccaggaactcatc
atccaggtcgaaaaggaagagcgcggcaacaagggcgcggccctcaccaccttcatctcc
ctggccggccgctacctggtgctgatgcccaacaatccgcgcggcggcggcgtgtcgcgc
cgggtcgagggcgaagaccgccaggaactgcgcgacaccatggaccagctggaaatcccg
gccggcatgagcatgatcgcccgcaccgccggcatcggccgcggcgtcgaggaactgcag
tgggacctgaactacctgctgcagctctggaccgccatcgacgccgccgcccgcgaaaac
aaggcgccgatcctgatctacctggaatccagcttggtcatccgcgccatccgcgactac
ttctcgcctgaaatcggcgaaatcctgatcgatacggacgacattcacgatcaggcgacc
gccttcatgagcgtggtcatgcccgacaacgtcaaccgcgtgaaacgctaccgcgacgac
gtgcccctgttctcccgcttccagatcgaacaccagatcgagaccgcctactcgcgcacg
gtcaccctgccctcgggcggcgccatcgtgatcgaccacaccgaggccctggtggcggtg
gacgtcaactccgcgcgctccacgcgcggcgccgacatcgaggaaaccgccctgcgcacc
aacctggaggccgccgacgaagtcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggacagcaagaaccagcgctccgtcgaacagcgc
ctgcgcgacgccctgcatttcgaccgcgcccgcgtgcagatgggcaagatctcgcgcttc
ggcctgatggaactgtcccgccagcgcctgcgcccggccctgaacgaaggctcgcacgtc
acctgcccgcgctgtaccggcaccggcgtgatccgcgacgccgaatccagcgccctgcac
gtgctgcgcctgctccaggaagaagccatgaaggaaggcacggccgccctgcacgcccag
gtgccggtcgacgtcgccaccttcctgctcaacgaaaagcgccgcgacatcggccagatc
gagtcccgcctgaaggtcaatctggtcctgatcccgaacaagtccctggaaaccccgcac
caccacatcgagcgcctgcgccacgacgatccgcgcctggacgagaacaagaccagcttc
gagctcgcccaggaacccgaggacaagctcgtctggcagccgaacaaggcccaggaagcc
aaggcccggcccgaggccctggtcaagggcatccagcccgccgagccggcgccggcccac
gtggaacgcgcgccgcgcgccgccgaaatccccgccccccttcccgcgcccgccgccgcg
gcgcccgccgcgccgcagggcggactgctcaagcgcctgttcggctggttcacgggctcg
gccgccgaagccgaagcccccgccgccgagccggccgcgcccgctccgtcgcgtgaatcc
ggcgacggccgccggcgcggcaccaccggccgcaatggcggccgccgcggcgaacgccgc
accgacgcgccccgcggcgaacgcaccggccgcggcgagcgtgccgaacgcggtgaacgc
acggaacgcggcgatcgcacggaacgcgccgaacggccggaacgcgccgaacggccggaa
cgcgccgagcgcgcggaacgtccggaaggccggccggcctcccgccgcgaacgcccggcc
gcggacgccgccgtgccggcccaggccgacaccgccgtcgtcgccgaagtccaggacgag
accgccgaaccgcgccgcagccgcagccggcgtggccggggccgcggccgcacggacgaa
atggccgtgcaggcgggcgaaacggccgacctccaggccgacgagctgaccgccccggcg
gccgacgcgccggccgccgtccaggccccctctgaaaacgcctacggcctgccggatgcg
ccgcgcagcctgcctgaagccgaggacgaggatgcgccggtcgccggcccggccgtggac
gccgatgccgacggcgacctggacagcccggacccggaacgcaagcgccgccgccgccgc
ggccgccgcggccgccgcaacggcgatgccgccgacctggccgccaccgaggacgcctcg
gccgatggcgatgcgccgaccatcgaaacacacgagacgccgcgcttcgaccccgaagcg
ctgacagccgaagcctccgccgcgccggcgtcggccgaaaccacggccgatgccccgctt
gcccggcccgcgcccaccgagcccgcccgcacgccggtcgagccggcccaggcccaggcc
gaagccgccggcgaagcacccgcccggacccccgtggcgcccgtccagtctcccgtggaa
actgcaccggcggcggaacccgcccgcgtggccgaggccgcgcctgccgccaagccggtc
gcccaggccaagcctgtcgccgaagccgagcccgccacccaggccgcgcccgtcgtcgaa
gccgctccggcggccgagccggccgcgcaagacgcggcccaggccgaggcggacgaagcc
gcggcccaggaagcgcccgccgccgttcaggccgcgccggcagccgcgcctgcggctccg
gccccggccccggcttcggtggccgccgcgccggacgcgtcccacccgatcgccctgccc
tcgctggacgagtccctgcaggccgccggcatgcagatggtcgagacccgctccaccgcg
ccctacgtgccgcccgcgccgcccaagcccctgggccgcgcccgcaagccggccgcgcgg
acgcaggacgaaccgctgcaacaggtggaaacctcgcactga
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