Castellaniella defragrans: BN940_08681
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Entry
BN940_08681 CDS
T03058
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BN940_08681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_08681
Enzymes [BR:
cdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BN940_08681
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BN940_08681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
PaaX_C
AAA_11
AAA_12
Fic-like_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
CDM24199
UniProt:
W8WXB7
LinkDB
All DBs
Position
1859910..1863728
Genome browser
AA seq
1272 aa
AA seq
DB search
MSAQRQGDGMNGAPAIPQVDPLRFPLRGSHLIEASAGTGKTWTIAALYVRLVLGHGGQDP
RLPTEILVLTFTEAAAQELRDRIRARLAEAAVWFAGEARDEAGHGADHEVNREADHGTDH
GTDHEADHEADHEADREADHGTDHEAGHGADHETGHETGHAADPFLASLRREWPRDRWAG
CARTLDLAAQSMDEAAISTIHAWCARVLQEHAFDSGSLFEQRLEPDLGAEIRQTAWDYWR
AHVAPLAPDDLAEVLAVWSGPDALLGLSGLLTRESLPEAADESLSAVLARHRAVRRERLA
ALKAPWIEAADALEDWLVSLGKDTKIRPADLRRWMQALRTWARDPELAELDLKTGWDRLT
PQGIQDKWQGEEPAPQHPASAALVRLRADLAALPGARAPLLRHALAWMARRLRQALSSAA
LLGFDGLLGNLDAALEGAAGARLAQTLRRQFPVVLIDEFQDTDPVQYRIFDRVYRVADDD
PDTALVFIGDPKQSIYGFRGADVHTYLRAGRACAGRVQTLGRNYRSSEAMVAAVNRCFAL
RGAQAFPTGLPDVGIAFHPVQAQGRAERWEVLGRPAPAMSACWIEPAAPDKPLSSTQYEQ
DAAALCARRVAETLALGRRGAAGMREGGRWTPVRPADVAILVNTHAEARSVRQALARAGV
RSVYLSERDSVYESPQTAELALWLDACAHPEDERALRAALAAPALGLDWQALDRLVEDER
AWDAQVERFQAYRQIWRQRGVLPMLRRLLHDFDVPARLLADGYEGERRLTDFLHLAELLQ
QAAAHLDGEQAVLRYLHRQAQSPQGEDGRRLRLESDEGLVRVVTVHKSKGLEYPLVFLPF
VCKARPVKAGEGPYLLPGAAGREWVMEADAEALLRLDGERLGEDVRKLYVALTRARHAVW
MALGPLKAGGGSAIGHLLGADLRAAWDGLARAHPGLMAWDAASADDAGEAPFAGAPAEAP
EALGEARRLAAPAVGQPWWISSYSALCLADAAAPETAAEDVLREGRQADPAPAPRAAEAA
PVPLASGLRDFPRGSEAGTFLHGLLEWAARRAFRDLDAEARDLIARRCAVRGWEAHIDAL
HDWLLRLARTPWRPALPGDPVLRLDRLQACLPEMEFWLPAQRVDIGRLDGLLRRATFGGA
ARPALAAGRLNGMFKGFIDLVLQADGRYYLIDYKSNDLGARAADYAPEALEAAMCASRYD
AQMLMYVLALHRQLRARLADYDYARHMGGALYLFLRGQEAPGQGLVALRPERGLVEALDA
LFDGADGEAGDD
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgcagcgccagggggacggcatgaacggtgcgcccgcgattccccaggtcgat
ccgctgcgcttccccctgcgcggcagccacctgatcgaggccagcgccggcaccggcaag
acctggacgatcgccgcgctgtacgtgcgcctggtgctgggccatggcgggcaggatccg
cgcctgcccaccgagatcctcgtcctcaccttcaccgaggcggccgcccaggaattgcgc
gaccggatccgcgcccgcctggccgaggccgccgtctggttcgccggcgaggcgcgggat
gaagccggccatggggccgatcatgaggtcaatcgtgaggccgatcatgggaccgatcat
gggaccgatcatgaggctgatcatgaggctgatcatgaggctgatcgtgaggccgatcat
gggaccgatcatgaggctggtcatggggccgatcacgaaaccggtcacgagaccggccat
gcggccgatcccttcctggcgtcgctgcgccgggaatggccgcgggaccgctgggccggc
tgcgcccgcacgctggacctggcggcgcagtccatggacgaggccgccatttccaccatc
cacgcctggtgcgcccgggtcctgcaggagcacgccttcgacagcggcagcctgttcgag
cagcggctggagccggacctgggcgccgagatccgccagacggcctgggactactggcgc
gcgcacgtggcgccgctggcgccggacgacctggccgaggtgctggccgtctggtccggg
ccggatgccctgctcggcctgtccggcctgctgacccgcgaatccctgcccgaggccgcc
gacgaaagcctgtccgccgtgctggcgcgccaccgggcggtgcggcgggaacgcctggcc
gcgctgaaggcgccctggatcgaggccgccgacgcgctggaggactggctggtctcgctg
ggcaaggacacgaagatccggccggcggacctgcgccgctggatgcaggcgctgcggacc
tgggcgcgggaccccgagctggccgaactggatctcaagaccggctgggaccgcctgacg
ccgcagggcatccaggacaagtggcagggcgaggagccggcgccgcagcatcccgccagc
gcggccctggtccgcctgcgcgccgatctggccgcgctgcccggcgcgcgcgcgcccctg
ctgcgccatgccctggcctggatggcccggcgcctgcgccaggccctgtccagcgccgcg
ctgctgggcttcgacggcctgctgggcaatctggacgccgcgctggaaggcgccgcgggc
gcgcgcctggcgcagaccctgcggcgtcagttcccggtggtgctgatcgacgaattccag
gacaccgacccggtacagtaccgcatcttcgaccgcgtctaccgggtggccgacgacgac
cccgacaccgcgctggtcttcatcggcgaccccaagcagtccatctacggcttccgcggc
gccgacgtgcacacctacctgcgggcgggccgggcctgcgccggacgggtgcagacgctg
gggcgcaactaccgttcgtccgaggccatggtcgccgcggtcaaccgctgcttcgccctg
cgcggcgcgcaggcctttcccaccggcctgccggacgtgggcatcgccttccatcccgtg
caggcccagggccgcgccgaacgctgggaagtcctgggccgcccggccccggccatgagc
gcctgctggatcgagccggccgcgccggacaagcccctgtcctcgacccagtacgagcag
gacgccgccgcgctctgcgcccggcgcgtggccgaaacgctggcgctgggccggcgcggc
gcggcgggcatgcgcgagggcggccggtggacgccggtgcggcccgccgacgtcgccatc
ctggtcaacacccatgccgaggcgcgcagcgtgcgccaggcgctggcccgggccggggtg
cgcagcgtgtacctgtccgagcgggattccgtctacgaatcgccgcagacggcggaactc
gccctgtggctggatgcctgcgcccatcccgaggacgagcgcgccctgcgcgcggccctg
gcggccccggcgctgggcctggactggcaggcgctggaccggctggtggaggatgaacgc
gcctgggacgcccaggtcgagcggttccaggcctaccgccagatctggcgccagcgcggc
gtgctgcccatgctgcgccggctgctgcacgatttcgacgtgccggcccgcctgctggcc
gacggctacgagggcgagcggcgcctgaccgatttcctgcacctggccgagctgctgcag
caggccgccgcgcacctggacggcgagcaggccgtgctgcgctacctgcatcgccaggcc
caatcgcctcaaggcgaggacgggcgccgcctgcgcctggaaagcgacgagggcctggtg
cgggtcgtgaccgtgcacaagtccaagggcctggaatatcccctggtcttcctgcccttc
gtctgcaaggcgcgtccggtgaaggcgggcgaggggccgtacctgctgcccggcgcggcc
ggccgggaatgggtcatggaggcggacgccgaagcgctgctgcgcctggacggcgagcgc
ctgggcgaggacgtgcgcaagctgtacgtggcgctgacgcgcgcgcgccacgccgtctgg
atggcgctggggccgctgaaggccggcggcggcagcgccatcggccacctgctgggcgcg
gacctgcgggcggcctgggacgggctggcgcgggcccatcccggcctgatggcctgggac
gcggcatcggcggatgacgccggcgaggcgccgtttgccggtgcgccggccgaagcgccc
gaggcgctgggcgaagcccgccgcctggccgcgccggccgtcggccagccctggtggatc
tccagctattccgcgctgtgcctggccgatgccgccgcgcccgagaccgccgccgaggac
gtgctgcgcgagggccgccaggccgatcccgcgccggcgccgcgggcggcggaggccgcg
ccggtgccgctcgcctcgggcctgcgcgactttccgcgcggcagcgaggccgggacgttc
ctgcacggcctgctggaatgggcggcgcggcgcgccttccgcgacctggacgcggaggcg
cgcgacctgatcgcccggcgctgcgcggtgcgcggctgggaggcgcacatcgacgcgctg
cacgactggctgctgcggctggcgcgcacgccatggcggccggccctgccgggcgacccg
gtgctgcgcctggaccgcctgcaggcctgcctgccggaaatggagttctggctgccggcg
cagcgggtggacatcgggcgcctggacgggctgctgcgccgcgcgacgttcggcggcgcc
gcccgtcccgcgctggcggcggggcggctgaacggcatgttcaagggcttcatcgacctg
gtcctgcaggccgacggccgctattacctgatcgactacaagtccaacgacctgggcgcg
cgcgcggccgactacgctcccgaggcgctggaggcggccatgtgcgcgtcccgctacgac
gcgcagatgctgatgtacgtgctggcgctgcaccgccagctgcgcgcgcggctggcggac
tacgactatgcgcgccacatgggcggcgcgctgtacctgttcctgcgcggccaggaggcg
cccggccaggggctggtggccctgcggcccgaacgcggcctcgtcgaggcattggacgcg
ctgttcgacggcgcggacggggaggcgggcgatgactga
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