Castellaniella defragrans: BN940_11081
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Entry
BN940_11081 CDS
T03058
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03410
Base excision repair
cdn03430
Mismatch repair
cdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BN940_11081
03430 Mismatch repair
BN940_11081
03440 Homologous recombination
BN940_11081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_11081
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BN940_11081
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BN940_11081
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN940_11081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
bMG1
Motif
Other DBs
NCBI-ProteinID:
CDM24676
UniProt:
W8X4X4
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All DBs
Position
2395618..2397318
Genome browser
AA seq
566 aa
AA seq
DB search
MRPLILARTADPARTRALAAAGAHPLLARLWAARGLEQAGPTEWAALIPPARLGCVDQAG
ELLADAIQAGRRLLIVADYDCDGATACAVAVRALREMGARVDFLVPNRFETGYGLSPAVV
ELACRHPAGKPDLLVTVDNGIASIEGVAAARDAGIEVIVTDHHLPGPDLPDALAIVNPNQ
AGCGFPSKHLAGVGVIFYVMLALRAALRARGVLPPKGGPKLEAYADLVALGTVADVVRLD
ANNRLLVGQGLRRIRQGRMQAGLAALFEVAGRDPARAGTDDLGFALGPRINAAGRMADMS
LGIHCLLEDDPGRALELARALDEINRERRVRETVMRDEALAQLDATAQALAASVCVWQPG
WHQGVIGLVASRLKETYWRPALAFAPDDGDTLRGSGRSIPEVHLRDALDLVSKRLPGAIL
QFGGHAMAAGLTLRTAAFDDFSRQFDAAVRTLGGRESFEPRLDTDGSLEPDYLTVETAGL
LADQIWGAGFPPPLFQDRFRVLHQRLLKDRHLKLFLERDGLRLDAIWFNHADPLPDAIEA
VYRLDCNTWGGRSSVQLLIEDARDAA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcccgctgatcctcgcgcgcaccgccgacccggcccgcacccgggccctggcggcg
gccggcgcccaccctctgctggcccgcctgtgggccgcccgcggcctggaacaggccggc
cccaccgaatgggccgccctcatccccccggcccggctcggctgcgtcgaccaggccggc
gagctgctggccgacgcgatccaggccggacggcggctgctgatcgtggccgactacgac
tgcgacggcgccaccgcctgcgccgtggccgtgcgcgccctgcgcgagatgggcgcgcgg
gtcgatttcctggtccccaaccgcttcgagaccggctacggcctgtccccggcggtggtc
gagctggcctgccgccatccggccggcaagccggacctgctggtgacggtggacaacggc
atcgccagcatcgaaggcgtcgccgccgcgcgcgacgcgggaatcgaggtcatcgtcacc
gaccaccacctgcccggccccgacctgcccgacgccctggccatcgtcaacccgaaccag
gccggctgcggctttccctccaagcacctggccggcgtgggcgtgatcttctacgtcatg
ctggccctgcgcgccgcgctgcgcgcgcgcggcgtcctgccccccaagggcggcccgaag
ctcgaagcctacgccgacctggtggccctgggcacggtggccgacgtggtgcgcctggac
gccaacaaccggctgctggtcggccaggggctgcggcgcatccgccaggggcgcatgcag
gccgggctggcggccttgttcgaggtcgccggccgcgatccggcgcgggccggcacggac
gacctgggcttcgccctggggccgcgcatcaacgccgccggccgcatggccgacatgagc
ctgggcatccactgcctgctggaggacgatcccggccgcgccctggaactggcccgggcg
ctggacgagatcaaccgcgaacgccgcgtccgggaaaccgtcatgcgcgacgaagccctg
gcgcagctggacgcgaccgcccaggccctcgccgccagcgtctgcgtctggcagccgggc
tggcatcagggcgtgatcggcctggtggcctcgcgcctgaaggaaacctactggcgcccc
gccctggccttcgcgccggacgacggcgacaccctgcgcggctcgggccgctcgattccc
gaagtccacctgcgcgacgcgctggacctcgtcagcaagcggctgccgggcgcgatcctg
cagttcggcggccacgccatggcggccggcctgacgctgcgcacggcggccttcgacgat
ttttcgcggcagttcgacgccgccgtgcgcaccctgggcgggcgcgaatccttcgagccg
cgcctggacaccgacggttcgctggaaccggactacctgaccgtggaaaccgccggcctg
ctggccgaccagatctggggcgccggattcccgccgcccctgttccaggaccgcttccgc
gtcctgcaccagcgcctgctgaaggacaggcacctgaaactgttcctggagcgcgacggc
ctgcgcctggacgccatctggttcaatcacgccgaccccctgcccgacgccatcgaggcc
gtctaccggctggactgcaatacctggggagggcgcagcagcgtgcaactgctgatcgag
gacgcgcgggacgcggcctga
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