Castellaniella defragrans: BN940_11216
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Entry
BN940_11216 CDS
T03058
Name
(GenBank) DNA topoisomerase IB (poxvirus type
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cdn
Castellaniella defragrans
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdn03032
]
BN940_11216
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_11216
Enzymes [BR:
cdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BN940_11216
DNA replication proteins [BR:
cdn03032
]
Prokaryotic type
DNA Topoisomerases
BN940_11216
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BN940_11216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
CDM24702
UniProt:
W8X4B1
LinkDB
All DBs
Position
complement(2424885..2425997)
Genome browser
AA seq
370 aa
AA seq
DB search
MTPRTPRRAPAAPRAALACTGDHEPGYRRERDRHGGFRYRDRDGRLVRHPAVLARIRALA
IPPAYEDVWICARADGHLQATGRDARGRKQYIYHPDWTARRGRHKFDQLAGFGAALVRIR
RRVRRDLRLPGLPRERILALAVALLDGTLIRIGSARYARGNGSYGLTTLTRRHATVSGAK
IRLRFRGKSGVDQDVTVVDRRLARLVRRCLDLPGQRLFKYHDERGAFHRIDSAAVNAYLR
EIAGRDVSAKHFRTWGGSVMALDLLSRAEDGDGDGGRPRERERRVNEAMKSVARRLGNTA
TVCRACYVHPAVVSAYLDGAIPARGPAPPGPRGLSAAERRLLAFLARDSGADAQRPHGRR
LRSGGANGET
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccaggacaccccggagggcgcccgcggcgccccgggccgcgctcgcctgcacc
ggggaccacgagcccggctaccgccgggaacgcgaccggcacggcggtttccgctaccgg
gaccgcgacgggcggctggtgcgccacccggccgtcctggcgcgcatccgggccctggcg
attccgcccgcttacgaggacgtctggatctgcgcgcgcgccgacggccatctgcaggcc
accggacgggatgcgcggggccggaagcagtacatctaccatcccgactggaccgcgcgg
cgcggccggcacaaattcgaccagctcgccggcttcggcgccgcgctggtgcggatccgg
cggcgggtccgccgcgacctgcgcctgccgggcctgcccagggagcggatcctcgccctg
gcggtggcgctgctggacggcacgctcatccggatcggcagcgcgcgctatgcgcgcggc
aacggcagctacggcctgacgacgctcacccggcgccacgccaccgtctcgggcgcgaag
atccgcctgcggttccgcggcaagagcggcgtcgatcaggacgtcacggtggtcgaccgc
aggctggcgcggctggtgcgccgctgcctggacctgcccgggcagcggctgttcaagtat
catgacgagcgcggcgcgttccaccggatcgattccgcggcggtcaacgcctacctgcgc
gagatcgcgggccgcgacgtcagcgccaagcacttcaggacctggggcgggtcggtgatg
gccctggacctgctgagccgggcggaggatggggacggggatggcggccggccgcgggaa
cgcgaacgccgggtgaacgaggccatgaaatccgtggcccgccgcctgggaaataccgcg
acggtctgccgcgcatgctatgtgcacccggccgtggtgtcggcgtacctggacggcgcg
atcccggcgcgcgggcccgcaccgcccggcccgcgcgggctgagcgcggcggaacgccgc
ctgctggcgtttcttgcgcgggattcgggggctgatgcgcagcgtccacacggacgaagg
ctccggtccggtggtgcgaacggagagacttga
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integrated database retrieval system
