Castellaniella defragrans: BN940_11316
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Entry
BN940_11316 CDS
T03058
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03420
Nucleotide excision repair
cdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN940_11316
03430 Mismatch repair
BN940_11316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_11316
Enzymes [BR:
cdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN940_11316
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN940_11316
MMR (mismatch excision repair)
Other MMR factors
BN940_11316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDM24722
UniProt:
W8X4C2
LinkDB
All DBs
Position
complement(2451936..2454308)
Genome browser
AA seq
790 aa
AA seq
DB search
MIDGLNEPQRAAVTLPAQHALVLAGAGSGKTRVLTTRMAWLIQTGQVGPHGLLAVTFTNK
AAREMLTRLSALLPINTRGMWVGTFHGLCNRLLRAHHREAGLPQTFQILDSADQLSAIKR
MLKAAGIDDERFPPRDVQRMINGAKEDGLRPGDLDARDPHARRLADLYQRYQDQCEREGV
VDFGELLLRAYELLQREAPIREHYQRRFRHILVDEFQDTNVLQYRWLMLLAGAHTPVFAV
GDDDQSIYAFRGANVGNMADFEQRHAHGNVIRLEQNYRSHGHILDSANALIAHNSNRLGK
NLWTDAGEGEPLRVVEQASDALEAQWLVDEVRALIREGRPAHEIAILYRSNAQSRPIEHA
LFSARVPYRVYGGQRFFERQEVKHVLAYLRLIDNPNDDTSWMRVVNFPTRGIGARTLEQL
ADMAAQQGTSLAGAVAFVPGKAGASLARFATLIRELAEEARTLDLPELIGHVVHHSGLEA
HYRADREGQDRLENLQELVNAAAAFVAEEGFQGLPAGRIPEGAAIAADVAADAAGSPGAP
VPAFGADSGAAGPSDAPDPAFGAAAQPAPAVMSPLGAFLSHASLEAGDNQAQAGEDAVQL
MTVHAAKGLEFDVVFITGLEEGLFPHENSLLDAGGLEEERRLMYVAITRARERLTLTLAQ
SRMLHGQTRYGMRSRFLDEIPEEHLKWITPRQRPAAAQQPWSGAFRRGLGGWQGEDGSTF
APRAPRTQAAGVTVGEQCFRIGTGVRHGRFGEGTVVALSGSGADAQARIEFCDAGTKTLA
LGVAKLEVLD
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatagacggcctgaacgaaccacaacgcgcggcggtcacgctgcccgcgcagcacgcc
ctggtgctggccggcgccggcagcggcaagacccgcgtcctgaccacccgcatggcctgg
ctgatccagaccgggcaggtcggcccccacggcctgctggccgtcaccttcaccaacaag
gccgcgcgggaaatgctcacgcggctgtcggcgctgctgcccatcaacacccgcggcatg
tgggtcggcaccttccatggcctgtgcaaccggctgctgcgcgcgcaccaccgcgaggcc
ggcctgccgcagaccttccagatcctggacagcgccgaccagctctcggccatcaagcgc
atgctgaaggccgccggcatcgacgacgagcgctttccgccgcgcgacgtgcagcgcatg
atcaacggcgccaaggaagacggcctgcgcccgggcgacctggacgcgcgcgacccccac
gcccgccggctggccgacctgtaccagcgctaccaggaccagtgcgaacgcgagggcgtg
gtcgatttcggcgaactgctgctgcgcgcctacgaactgctgcagcgcgaagcgccgatc
cgcgagcactaccagcgccgtttccggcatattctggtggatgaattccaggacaccaat
gtgctgcagtaccgctggctgatgctgctggcgggcgcgcacacgccggtgttcgcggtg
ggcgacgacgaccagtccatctacgccttccgcggggcgaacgtcggcaacatggccgac
ttcgagcagcgccatgcgcacggcaatgtgatccgcctggagcagaactaccggtcgcac
ggccacatcctggactcggccaacgccctgatcgcgcacaacagcaaccgcctgggcaag
aacctctggaccgacgcgggcgagggcgagcccctgcgcgtggtcgagcaggcctccgac
gcgctggaggcccagtggctggtggacgaggtccgcgccctgatccgcgagggccgcccg
gcccacgagatcgccatcctgtaccgcagcaacgcccagtcgcgccccatcgagcacgcc
ctgttctccgcccgcgtgccgtaccgggtctacggcggccagcgcttcttcgagcgccag
gaggtcaagcacgtgctggcctacctgcgcctgatcgacaatcccaacgacgacacgtcc
tggatgcgggtggtgaacttccccacgcgcgggatcggcgcgcgcacgctggagcaactg
gccgacatggccgcgcagcagggcaccagcctggccggcgcggtggccttcgtgccgggc
aaggcgggcgccagcctggcgcgcttcgccaccctgatccgcgagctggccgaggaagcc
cgcacgctggacctgcccgagctcatcggccacgtggtgcaccacagtggcctggaggcc
cactaccgggccgaccgcgagggccaggaccgcctggaaaacctccaggaactggtcaat
gccgcggccgccttcgtggccgaggaaggcttccagggcctgcccgccggccgcattccc
gaaggcgcggccattgccgccgacgtggcggccgacgccgccggatcgcccggcgcgccg
gtgccggccttcggtgcggactccggtgccgcgggtccgtccgatgcgccggatccggcc
ttcggcgcggccgcgcagcctgcgcccgccgtcatgtcgcccctgggcgccttcctcagc
cacgcctccctggaggccggcgacaaccaggcccaggccggcgaggacgccgtgcagctc
atgaccgtgcacgcggccaagggcctggaattcgacgtggtgttcatcaccgggctggaa
gagggcctgttcccccatgaaaacagcctgctggacgcgggtggcctggaagaggaacgc
cgcctgatgtacgtggccatcacgcgggcgcgcgagcgcctgacgctgaccctggcgcag
agccgcatgctgcacggccagacgcgctacggcatgcgctcgcgcttcctcgacgagatc
ccggaagagcacctgaaatggatcaccccgcgccagcgcccggccgccgcccagcagccc
tggagcggcgccttccggcgcggcctgggcggctggcagggcgaggacggcagcaccttc
gcgccgcgcgcgccgcgcactcaggcggccggcgtcacggtgggcgaacagtgcttccgc
atcggcacgggggtgcgccacgggcgcttcggcgaaggcaccgtggtggcgctgagcggc
agcggcgccgacgcccaggcgcgcatcgaattctgcgacgccggcaccaagaccctggcc
ctgggcgtggccaagctggaagtgctcgactga
DBGET
integrated database retrieval system
