Castellaniella defragrans: BN940_12341
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Entry
BN940_12341 CDS
T03058
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03030
DNA replication
cdn03430
Mismatch repair
cdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN940_12341
03430 Mismatch repair
BN940_12341
03440 Homologous recombination
BN940_12341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdn03032
]
BN940_12341
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_12341
Enzymes [BR:
cdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN940_12341
DNA replication proteins [BR:
cdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN940_12341
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN940_12341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
CDM24919
UniProt:
W8WZ90
LinkDB
All DBs
Position
complement(2657893..2661372)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTTSPDTPLFVHLRSHSEFSVVDGIARIPDLIGRAREFGQPAMAISDLANLFGWIKFYKA
ARKAGIKPIAGCDAWLHNPADEDKPFRVLLLASCHAAYLDLCELLSRAWTENSQRGRAEL
RREWLSGRNGLIALSGARAGDVGQALEAGRDDEARRLARQWAADFPDGYFIELQRAGFDG
DEAYVQAALRLAADCGLPVVATHPIQFIAPSDFRAHEARVCIAEGELLGNPRRVRRFTAE
QYMPDSADMARRFADVPSALANAVQIARRCNLTLTLGEPQLPLFPTPDGVSLDDYLVQLA
NEGLARRMVQLYPDPDERARQMPAYQERLDLECRTIIGMGFPGYFLIVQDFINWGKSHGV
PVGPGRGSGAGSLVAFSLGITDLDPLRYDLLFERFLNPERVSMPDFDVDFCQDNRERVIE
YVKEKYGRDAVSQIATFGTLGAKAVVRDVGRVLEMPYSVCDRLSKMIPFNPADPWSLDRT
LEHEPAFRELYDTDEEIHALIDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGS
ESSVVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVREFNPDKRDFDLMALPLDDQA
TYDLLSAANTTAVFQLESRGMKELLKSMRPNTFEDVVALLALFRPGPLESGMVVDFVNRK
HGRAEVDYFHPDLEPVLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEM
AKHRVIFQEGAARKGYDPELAAHLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKVYHPA
EFLAATMLSDMDDTDKIQVFWRDALENDVAVLPPDVNESGYRFAPVADEHTARGRPPRTI
RYGLGGVKGTGQSAVEAIIAAREAGGRFTGLFDFCARVDRHAVNRRTIEALIRAGAFDSL
EPNRAALLEALGSAIEAAEQAERNANQVSLFDDDTDALVADELARVPPWDLETRLTEEKT
ALGFYFSGHLFDAWRDEIRRIAPTPLARLAPSRGPQWLAGVLAEVRVRMTRRGKMLYALL
DDGSAQIEVAIFNELYEQHRQSLKEDRPLVIQGRVSHDDYSGGLRVSADELYDLQRVRES
RARSLRLSVSGDLDPGRLEGLLAPWRSAEAGVPVELRLNGARFSCLLRLGEDWRVRMDET
LIADARQWLSHDNVEIHYG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgtcccccgatacccccctgttcgtccacctgcgcagccactcggaattttcc
gtggtggacgggatcgcgcgcatccccgacctgatcggccgcgcgcgggaattcggccag
ccggccatggcgatcagcgacctggcgaacctgttcggctggatcaagttctacaaggcg
gcccgcaaggccggcatcaagcccatcgccggctgcgacgcctggctgcacaatccggcc
gacgaggacaagcccttccgcgtcctgctgctggcctcctgccatgccgcctacctggac
ctgtgcgaactgctgtcgcgcgcctggacggaaaacagccagcggggccgggcggaactg
cggcgcgaatggctgtcgggcaggaacggcctgatcgccctgtcgggcgcgcgcgcgggc
gacgtgggccaggccctggaggccggccgcgacgacgaggcccgccgcctggcgcgccag
tgggccgccgatttcccggacggctatttcatcgagctgcagcgcgccggcttcgacggc
gacgaggcctacgtccaggcggcgctgcgcctggcggcggactgcggcctgccggtggtg
gccacgcaccccatccagttcatcgcgccgtccgacttccgcgcccacgaggcccgcgtc
tgcatcgccgaaggcgaactgctgggcaatccgcgccgcgtgcggcgcttcacggccgag
cagtacatgcccgacagcgccgacatggcgcgccgcttcgccgacgtgccctcggccctg
gccaacgcggtgcagatcgcgcgccgctgcaacctgaccctgaccctgggcgagccgcag
ctgccgctgttccccacgcccgacggcgtgtcgctggacgactacctggtgcagctcgcc
aacgagggcctggcgcgccgcatggtccagctgtatccggaccccgacgaacgcgcccgc
cagatgcccgcctaccaggaacgcctggacctggaatgccgcaccatcatcggcatgggc
tttcccggctacttcctgatcgtgcaggacttcatcaactggggcaagagccacggcgtg
ccggtggggccggggcggggctcgggcgccggctcgctggtggccttcagcctggggatc
accgacctggatccgctgcgctacgacctgctgttcgagcgcttcctcaatcccgagcgc
gtgtccatgcccgacttcgacgtggatttctgccaggacaaccgcgaacgggtcatcgaa
tacgtcaaggaaaagtacggccgcgacgccgtcagccagatcgccaccttcggcaccctg
ggcgccaaggccgtggtgcgcgacgtcggccgcgtgctggagatgccctacagcgtctgc
gaccggctctcgaagatgatccccttcaatccggccgatccttggtcgctggaccgcacg
ctggaacacgagcccgccttccgcgaactctacgacaccgacgaggaaatccacgccctc
atcgacctggcccgccccctggagggcctgacgcgcaacatcggcatgcacgccggcggc
gtgctgatcgcgccaggcaagctgaccgacttctgccccctgtactgccagccgggcagc
gagtccagcgtcgtgtcccagttcgacaaggacgacgtcgaggccgccggcctggtcaag
ttcgacttcctgggcctgcgcaacctcaccatcctggactgggccgtgcgctacgtgcgc
gagttcaatccggacaagcgcgacttcgacctgatggccctgccgctggacgaccaggcc
acctacgacctgctgtcggcggccaacaccacggcggtgttccagctcgaatcgcgcggc
atgaaggaactgctgaaaagcatgcggcccaacaccttcgaggacgtggtcgccctgctg
gcgctgttccgccccgggccgctggaatccggcatggtggtcgatttcgtcaaccgcaag
cacggccgcgccgaggtcgattacttccaccccgacctggaacccgtgctcaagagcacc
tacggcgtcatcgtctaccaggaacaggtgatgctgatctcgcagatcatcggcggctat
tccctgggcggcgccgacctgctgcgccgcgccatgggcaagaagaagcccgaggaaatg
gccaagcaccgggtgatcttccaggaaggcgcggccaggaagggctacgatccggaactc
gccgcccacctgttcgacctgatggagaagttcgcgggctacggcttcaacaagagccac
tcggccgcctacgccctgatttcctaccagaccgcctggctcaaggtctaccatccggcg
gaattccttgccgcgaccatgctgtcggacatggacgacaccgacaagatccaggtcttc
tggcgcgatgccctggaaaacgacgtggccgtcctgccgcccgacgtcaacgaatccggc
taccgcttcgcgccggtggctgacgagcacaccgcccggggccgcccgccgcgcaccatc
cgctacggcctgggcggggtcaagggcaccggccagtccgccgtggaagccatcatcgcg
gcgcgcgaggcgggcgggcgcttcaccgggctgttcgatttctgcgcccgggtggaccgc
catgccgtcaaccggcgcaccatcgaggctctgatccgcgccggcgccttcgactccctg
gagcccaaccgcgcggccctgctggaggccctgggcagcgccatcgaggccgccgagcag
gccgagcgcaacgccaaccaggtctcgctgttcgacgacgacaccgacgcgctggtggcc
gacgaactcgcgcgcgtcccgccgtgggacctggaaacccgcctgacggaagaaaagacc
gccctgggcttctatttcagcggccacctcttcgatgcctggcgcgacgagatccgccgc
atcgcgcccacgccgctggcgcggctggcgccctcgcgcgggccgcagtggctggcgggc
gtgctggcggaagtgcgcgtgcgcatgacccggcgcggcaagatgctctacgccctgctg
gacgacggcagcgcccagatcgaggttgcgatcttcaacgaactctacgagcagcaccgc
cagagcctgaaggaagaccgccccctggtgatccaggggcgcgtcagccacgacgactat
tccggcggcctgcgcgtgtcggccgacgaactctacgacctgcagcgcgtgcgcgaaagc
cgcgcccgcagcctgcgcctgtccgtgtccggcgatctggaccccggccgcctggagggc
ctgctggcgccctggcgctcggccgaagccggcgtgccggtggaactgcgcctgaacggc
gcgcgcttctcctgcctgctgcgcctgggcgaggactggcgcgtgcgcatggacgagacc
ctgatcgcggacgcgcggcagtggctgtcccatgacaacgtggagatccactacggatga
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