Castellaniella defragrans: BN940_14471
Help
Entry
BN940_14471 CDS
T03058
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN940_14471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdn03019
]
BN940_14471
Enzymes [BR:
cdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN940_14471
Messenger RNA biogenesis [BR:
cdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN940_14471
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CDM25339
UniProt:
W8X0D1
LinkDB
All DBs
Position
complement(3132024..3133940)
Genome browser
AA seq
638 aa
AA seq
DB search
MTDSTPQDSTAQAPVPFAQFGLHPGIMQAIEATGYVSATPIQAKAIPIAMSGRDVMGAAQ
TGTGKTAAFSLPILHRLMPFASNSASPARHPVRALILTPTRELADQVHANVAQYSRFVPL
RTAVVFGGVDIRPQRDLLRQGCEILIATPGRLLDHVEQRNVNLGQVGILVLDEADRMLDM
GFLPDLDRIMRLLPPGRQGLLFSATFSPEIRKLGRTFLRSPVEVEVARPNATADTVTQIA
YPLEGEAKRRAVVHLVKSRQLNQVIVFSNTKIGCSRLARQLEQDGVRAESIHGNKTQIER
MKALDAFKAGTLEVLVATDVAARGLDVAGVPCVINYDLPRNAEDYVHRIGRTGRAGASGE
AIALFAPEEERYLQDIEKLIKTKIPRGELELPRAAPAAARWAGITGRRAGAARPRRRWTT
SSPGPTSPPPPPRRAPKPNRAPPWCRRAGPWACCWAGASTADPRGMPPDRGAACDSGAPV
PVPLALDSLILDPPALVSSVLVSSVLIPRQRVQAARAGGQRRQVRRAVDQPPQVFGARLH
RAPVARAAPVLHQDRGKILDVLVAQPVGAVLDVHPQEGPAGVFVGQGLQQGAPGVAGAAP
GGAVAGHAAARICGQPLAQGVRGGVRIEQFHADRNPFL
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactccactccccaagactccaccgcccaagcgcccgttccatttgcccagttc
ggcctgcatcccggcatcatgcaggccatcgaggccaccggctacgtgtccgccaccccg
atccaggccaaggccatccccatcgccatgtccgggcgcgacgtcatgggcgccgcccag
acgggcacgggcaagaccgccgccttctccctgccgatcctgcaccggctgatgcccttc
gccagcaacagcgcctcgcccgcgcggcatcccgtgcgcgccctgatcctgacgcccacg
cgcgagctggccgaccaggtgcacgccaacgtcgcccagtacagccgcttcgtgcccctg
cgcacggcggtggtgttcggcggggtggacatccgcccgcagcgcgacctgctgcgccag
ggctgcgaaatcctgatcgccacgccggggcgcctgctcgatcacgtcgagcagcgcaac
gtcaatctcggccaggtcggcatcctggtgctggacgaggccgaccgcatgctggacatg
ggcttcctgccggacctggaccgaatcatgcggctgctgccgccgggccgccagggcctg
ctgttctccgccaccttcagcccggaaatccgcaagctcggccgcaccttcctgcgctcc
ccggtcgaggtcgaggtcgcgcgccccaacgccacggccgacaccgtcacccagatcgcc
tatcccctggaaggcgaggccaagcgccgggccgtggtgcacctggtgaagtcccgccag
ctcaaccaggtcatcgtgttttccaacaccaagatcggctgcagccgcctggcccgccag
ctggaacaggacggcgtgcgcgccgaatccatccacggcaacaagacccagatcgagcgc
atgaaggcgctggacgccttcaaggccggcaccctggaagtcctggtggccaccgacgtg
gccgcgcgcggcctggacgtggccggcgtgccctgcgtcatcaactacgacctgccgcgc
aacgcggaagactacgtccaccgcatcggccgcaccggccgcgcgggcgcctcgggcgag
gccatcgcgctgttcgcccccgaggaagaacgctacctgcaggacatcgaaaagctcatc
aagaccaagatcccgcgcggcgagctcgaactgccgcgcgccgcccccgccgccgcgcgg
tgggcgggcatcacggggcgccgggctggcgcggcgcgcccgaggcgccgctggacgact
tcttctcccggccctacgagcccgccgccgcctccgcgccgcgcgccgaagccgaatcgc
gccccgccgtggtgccggcgcgccggcccgtgggcgtgctgctgggcgggggcaagcacg
gctgatccgcgcggcatgccgccggatcgcggcgcggcgtgcgattcaggcgccccggtt
ccggttcccctggccctggattccctgatcctggatcccccggccctggtttcctcagtc
ctggtttcctcagtcctgattccgcgccagcgcgtccaggctgcccgggccggcggccag
cgccggcaggtccgccgcgccgtcgatcagccgccgcaggtgttcggcgcgcggctgcac
cgcgccccagtagcgcgtgccgccccggtcctgcaccaggatcgtgggaaaattctcgat
gtcctcgtcgcccagccagtcggggctgtcctcgacgtccacccacaggaaggtccagcc
ggggtattcgtcggccagggcctccagcagggggcgccaggcgtcgcaggtgcggcacca
ggcggcgcagtagcaggccacgcggcggcccgaatctgcggccagccgctcgcgcagggc
gtgcggggcggcgtgcggatcgaacaatttcatgcagacaggaatccctttctttga
DBGET
integrated database retrieval system
