Castellaniella defragrans: BN940_14576
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Entry
BN940_14576 CDS
T03058
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN940_14576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdn03019
]
BN940_14576
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_14576
Enzymes [BR:
cdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN940_14576
Messenger RNA biogenesis [BR:
cdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN940_14576
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN940_14576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
HHH
Motif
Other DBs
NCBI-ProteinID:
CDM25360
UniProt:
W8X9T0
LinkDB
All DBs
Position
3151682..3153622
Genome browser
AA seq
646 aa
AA seq
DB search
MHDEDLIPFWDEDGQPVAASPAGGRSAGPRGAPPPAATPRYASALDALREVFGYDAFRGE
QQAVIEHIIGGGDALVLMPTGGGKSLCYQIPALVRPGTGVVISPLIALMQDQVDALLELG
VRAAFLNSSQTPGQAREVERAFVRGELDLLYVAPERLLTPRCLDLLDGGRIALFAIDEAH
CVSQWGHDFRPEYQELKLLAERWPGVPRVALTATATAATRADIVACLSLDEAPQFVASFD
RPNIRYSIVEKHEVRRQLLDFIRAEHAGECGIVYALSRSRVEQTAEFLSRNGIAALPYHA
GLDARTRAEHQARFLREDGIVMVATIAFGMGVNKPDVRFVAHIDLPKSIEGYYQETGRAG
RDGLPADAWLAYGLQDVVQQRRMIDDSDGDALHQRRQMRQLDAMLALCETVTCRRQDLLA
YFGQTIEPCGNCDTCLEPPAAWDGTVAVQKLLSAVYRLWRERGQRFGGGHLIDVLRGQMT
DRIKQHGHDTLSVFGVGADLTADAWRGILRQALALGLLTVDLEGYGTLALTEASRAVLKG
ERTLMLRPVAVKRAKPGRQRTTTAAQLDALPPDALARFEHLRAWRARTAREHNVPAYVIF
HDATLREIALRNPASLDDLAGVSGVGARKLETYGPDVVACVGQIRD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgaagacctgatccccttctgggacgaggacggccagcccgtggcggcctcg
cccgccggcggccggtcggccgggccgcgcggcgcgccgccgcccgcggcaacgccgcgc
tacgccagcgccctggacgccctgcgcgaggtcttcggctacgacgccttccgcggcgag
cagcaggccgtcatcgagcacatcatcggcggcggcgacgcgctggtgctgatgcccacg
ggcggcggcaagtccctgtgctaccagatcccggccctggtgcgcccgggcacgggcgtg
gtcatctcgcccctgatcgccctgatgcaggaccaggtcgacgccctgctcgaactgggc
gtgcgcgccgccttcctgaattcgtcgcagacgcccggccaggcgcgcgaggtcgagcgc
gccttcgtgcgcggcgagctggacctgctgtacgtggccccggaacgcctgctgaccccg
cgctgcctggatctgctcgacggcgggcgcatcgccctgttcgccatcgacgaggcccac
tgcgtgtcgcagtggggccacgacttccgcccggaataccaggaactgaagctgctggcc
gagcgctggcccggcgtgccgcgcgtcgccctgaccgccaccgccaccgccgccacgcgc
gccgacatcgtcgcctgcctgtcgctggacgaggccccgcagttcgtcgccagcttcgac
cggcccaacatccgctacagcatcgtcgaaaagcacgaagtccggcgccagctgctggac
ttcatccgcgccgagcacgccggggaatgcggcatcgtctacgccctgtcgcgttcgcgc
gtcgagcagacggcggaattcctgtcgcgcaacggcatcgccgccctgccctaccacgcc
ggcctggacgcgcggacccgcgccgagcaccaggcccggttcctgcgcgaggacggcatc
gtcatggtcgccaccatcgccttcggcatgggggtcaacaagcccgacgtgcgcttcgtc
gcccacatcgacctgcccaagtccatcgagggctactaccaggagaccgggcgcgccggg
cgcgacggcctgcccgccgacgcctggctggcctacggcctgcaggacgtggtgcagcag
cggcgcatgatcgacgactccgacggcgacgccctgcaccagcgccgccagatgcgccag
ctcgacgccatgctggccctgtgcgagaccgtcacctgccggcgccaggacctgctggcc
tatttcggccagacgatcgagccctgcggcaactgcgacacctgcctggagccgcccgcc
gcctgggacggcaccgtggccgtgcagaagctgctgtcggccgtctatcgcctgtggcgc
gaacgcggccagcgcttcggcggcggccacctgatcgacgtcctgcgcggccagatgacc
gaccggatcaagcagcacgggcacgacacgctgagcgtcttcggcgtgggcgcggacctg
acggcggacgcctggcgcggcatcctgcgccaggccctggccctgggcctgctgacggtg
gacctggaaggctacggcaccctggcgctgaccgaagccagccgcgccgtgctgaagggc
gagcgcaccctgatgctgcgccccgtggcggtcaagcgcgccaagcccggccgtcagcgc
accaccacggccgcgcagctggacgccctgccgcccgacgccctggcgcgcttcgagcac
ctgcgcgcctggcgcgcgcgcacggcgcgcgaacacaacgtgccggcctacgtgatcttc
cacgacgccacgctgcgcgagatcgccctgcgcaatcccgccagcctggacgacctggcc
ggagtcagcggcgtgggcgcgcgcaagctggagacctacggccccgacgtggtcgcctgc
gtggggcagatccgcgactag
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