Castellaniella defragrans: BN940_16456
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Entry
BN940_16456 CDS
T03058
Name
(GenBank) Transcriptional regulator, IclR family
KO
K20539
IclR family transcriptional regulator, blcABC operon repressor
Organism
cdn
Castellaniella defragrans
Pathway
cdn02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BN940_16456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cdn03000
]
BN940_16456
Transcription factors [BR:
cdn03000
]
Prokaryotic type
Helix-turn-helix
IclR family
BN940_16456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
MarR_2
Dimerisation
MarR
HTH_20
DprA_WH
Rrf2
HTH_9
HTH_24
Motif
Other DBs
NCBI-ProteinID:
CDM25730
UniProt:
W8XA04
LinkDB
All DBs
Position
3574302..3575102
Genome browser
AA seq
266 aa
AA seq
DB search
MSADPASPERILAPAVARASAVLDLLARSGRPATLAELARALQLPKSSLHGLCATLEQLN
LITRLDGGQMTLGPHVMMWANAFMARLDITQEFFASWDDMRVLPEETITLSVRDGAEVVY
IACRNGQHPLGLRFHAGMRLPAVYTATGLAMLSTLPDASVRKLLDGLPGGWPVPLTDHGL
RDTAAVIDELRRIRQRRYSTDREWVREGMYCYGAPVFDSHHPEAVAGVAVSIRSLEANPA
LEERAGQAIRKLADRLSERLGAWRRP
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacccagcatcccccgaacgcatcctcgcgccggccgtcgcccgcgcctcc
gccgtgctggatctgctggcccgcagcggccgtcccgccaccctggccgaactggcccgg
gcgctgcagctgcccaagagcagcctgcacggcctgtgcgccacgctggaacagctgaac
ctgatcacgcggctggacggcggccagatgacgctggggccgcacgtgatgatgtgggcc
aatgccttcatggcgcggctggacatcacgcaggaattcttcgcgtcctgggacgacatg
cgcgtcctgccggaagaaaccatcacgctgtcggtgcgcgacggcgccgaggtcgtgtac
atcgcctgccgcaacggccagcaccccctggggctgcggttccacgccggcatgcggctg
ccggcggtctacaccgccaccggcctggccatgctcagcaccctgccggacgccagcgtg
cgcaagctgctggacggcctgcccgggggctggcccgtccccctcaccgaccacggcctg
cgcgacaccgcagcggtcatcgacgaactgcggcggatccgccagcggcggtattcgacc
gaccgcgaatgggtgcgcgagggcatgtactgctacggcgcccccgtcttcgattcgcac
caccccgaagccgtggcgggcgtggccgtcagcatccgttcgctggaggccaacccggcg
ctcgaagaacgcgccgggcaggccatccgcaagctggccgaccgcctgtccgagcgcctg
ggagcctggcgcaggccgtga
DBGET
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