Corynebacterium doosanense: CDOO_05750
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Entry
CDOO_05750 CDS
T03413
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdo
Corynebacterium doosanense
Pathway
cdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDOO_05750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdo03019
]
CDOO_05750
03009 Ribosome biogenesis [BR:
cdo03009
]
CDOO_05750
Enzymes [BR:
cdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDOO_05750
Messenger RNA biogenesis [BR:
cdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDOO_05750
Ribosome biogenesis [BR:
cdo03009
]
Prokaryotic type
rRNA helicases
CDOO_05750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
AIT60809
UniProt:
A0A097IFB1
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All DBs
Position
1128477..1130777
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AA seq
766 aa
AA seq
DB search
MSDIENAAGGENRPDDNYTSDIQNNSQGDAAQAAPVTEKFVVDSSTRDASGTENADSENN
NLDIDNNVNNQNDNAGTTDQVGNNPAITRDADAAAISNPDDMVGGAINLAQLNDQQDTPV
FAQAAPEAEPAKEKKSEPAEPAKAAKEEEPVSGFDNLGLPADVLKAIKKVGFEQPSPIQE
QTIPLLMEGRDVVGLAQTGTGKTAAFALPILARLDTKVRAPQALVLAPTRELALQSADSF
QSFADHLGGIQILPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLQKGSLDISNLKYLV
LDEADEMLNMGFQEDVERILEDTPDSKQVALFSATMPNGIRKISRQYLNDPIEVQVKTET
RTATNITQSYIYTAHRNKLDAITRILEVTEFEGMIVFVRTKHETEELAEKLRARGFSAAA
INGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRISHVLNYDIPNDTESYVHRIG
RTGRAGRKGEAILFVTPRERRMLRAIERATNATLYEMELPTVDEVNESRKEQFQDSITEA
MESKQINVFRNMVRAYSQEKDVPMEDIAAALAAKAQGDEHFLMKEQPAQRQDRFDRDDRR
GGRDDRRDDRRGGRDNERGGRDRDRGGARRPDGDFDTYRLAVGKRQNVRPGAIVGALANE
GGLNSRDFGRITIAVDHTLVELPKSLDSGVLGRLSGTRISGQLINIERDHSGPHEGGPRG
GGGRDRDDRRGGGFGGRSGGRDRDDRRGGGHDRDDRRGGGRGGWRD
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgagaacgccgccggcggcgaaaacaggccggacgacaactatacgtcg
gatattcagaacaactcgcagggtgacgcagcgcaggctgcacccgtcacggagaaattc
gtggtggactcgagcaccagggatgcgagcggaactgagaacgccgactccgagaacaac
aacttggacatcgacaacaacgtgaacaaccagaacgacaacgccggcaccacggatcag
gtgggcaacaaccccgccatcacccgcgacgccgatgcagccgccatcagcaacccggac
gacatggtcggcggtgccatcaacctggcccagctgaacgaccagcaggacacccccgtc
ttcgcccaggccgcccccgaggctgagccggccaaagagaagaagtccgagcccgcagag
cccgctaaggctgcaaaggaagaggagcccgtcagcggcttcgacaacctcggcctcccg
gccgacgtgctcaaggccatcaaaaaggtcggcttcgaacagccgtcgccgattcaggag
cagacgatcccgctgctcatggagggtcgcgacgtcgtgggcctcgcccagaccggtacc
ggcaagaccgcggccttcgcgctgccgatcctcgcccgcctggacaccaaggtccgcgca
ccgcaggcactggtcctcgcaccgactcgtgagctggctctgcagtccgcagactccttc
cagtccttcgccgatcacctcggcggcatccagatcctgcccatctacggtggccaggcc
tacggcatccagctctccggccttcgccgcggcgcccagatcatcgtgggtaccccgggt
cgtgtcatcgatcacctgcagaagggttcgctggacatctccaacctcaagtacctggtg
cttgatgaggccgacgagatgcttaacatgggcttccaggaggatgtcgagcgcatcctc
gaggacaccccggactccaagcaggtcgccctgttctccgcgacgatgcccaacggcatt
cgcaagatctcgcgccagtacctcaatgaccccatcgaggtccaggtaaagaccgagacc
cgcaccgcgacgaacatcacgcagagctacatctacacggctcaccgcaacaaactcgac
gccatcacccgcatcctcgaagtgaccgagtttgagggcatgatcgtgttcgtgcgcacc
aagcacgagaccgaggagctcgccgagaagctgcgtgcccgcggattctccgccgccgct
atcaacggtgacatcgcgcagaaccagcgtgagcgcaccgtcgatcagctcaaggacggt
cgtctggacatcctcgtcgccaccgacgtcgctgcccgtggcctggacgtcgaccgcatc
agccacgtgctgaactacgacatccccaacgacaccgagagctacgtccaccgcatcggc
cgtaccggccgtgcgggacgcaagggcgaggcgatcctcttcgtcaccccgcgcgagcgc
cgcatgctgcgtgccatcgagcgcgccaccaacgcgacgctgtacgagatggagctgccg
acggtggacgaggtgaacgagtcccgcaaggagcagttccaggactccatcaccgaggcg
atggaatccaagcagatcaacgtcttccgcaacatggttcgtgcctactcccaggagaag
gacgtccccatggaggacatcgccgcagcactggccgccaaggcacagggcgacgagcac
ttcctcatgaaggagcagccggctcagcgccaggaccgcttcgaccgtgacgaccgccgt
ggtggacgcgacgaccgtcgcgacgatcgtcgtggcggccgcgacaacgagcgcggcgga
cgtgaccgcgaccgcggtggcgcgcgccgcccggacggtgacttcgacacctaccgcctt
gccgtgggcaagcgtcagaacgttcgcccgggtgccatcgtcggcgccttggccaacgag
ggaggcctgaactcccgcgacttcggccgcatcaccatcgcagtcgaccacaccctggtc
gaactgccgaagagcctcgactccggggtactcggacgcttgagcggcacccgcatctcc
ggccagctcatcaacatcgagcgtgaccacagcggcccgcacgagggcggcccccgcggt
ggcggcggacgtgaccgcgatgaccgtcgtggcggcggattcggcggccgcagcggtgga
cgcgatcgtgacgatcgccgtggcggcggacatgaccgcgacgaccgtcgtggtggcgga
cgtggcggctggcgcgactag
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