Corynebacterium doosanense: CDOO_08445
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Entry
CDOO_08445 CDS
T03413
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdo
Corynebacterium doosanense
Brite
KEGG Orthology (KO) [BR:
cdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdo03019
]
CDOO_08445
Enzymes [BR:
cdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDOO_08445
Messenger RNA biogenesis [BR:
cdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDOO_08445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
WHD_HA2
NACHT
AAA_25
nSTAND_NTPase5
ABC_tran
TsaE
AAA_16
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AIT61281
UniProt:
A0A097IGL2
LinkDB
All DBs
Position
1674925..1678851
Genome browser
AA seq
1308 aa
AA seq
DB search
MTTHETSNDTQPSEPMSRDHLISALTDLSLADELAFRRRLKKARAPKALAAIAADMDRAR
QKVARIDAAVPDISYPEQLPVSGRRDDIADAIRDHQVVVIAGETGSGKTTQIPKICLELG
RGRRGLIGHTQPRRLAARTVAERVADELGQDIGETVGYAIRFDDRVSDTTAVKLMTDGIL
LTEMQRDRFLNAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPELFA
HHFAEPDGTPAPIIEVSGRTFPVEIRYRPLEFEAAGKTVDQDPLDGLCDALEELMAEGPG
DILCFFPGQRDITDTMEAIEGRKWRGIEVTPLFGRLSNEEQHRVFSPHSKRRIVLSTNIA
ETSLTVPGIHYVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRL
YSEEDFQSRPEFTDPEILRTNLASVILQMISLRLGDIAAFPFVQPPEPKAVRDGLGLLHE
LGALTDREDDGLPMLTNIGRDLSKIPVDPRMARMLVEADRLAVLEDVLVLVSAMTIQDVR
ERPMDKQSQADQSHARFKDKTSDFLSTLQLWDYINTSRDDLSGNAFRRRMKDEYLHYMRI
REWYDLVRQLRDTTRRLGWNRQSAAENRDSDGIHRALLSGLLSNIGARDGNSKEFQGARG
TRFLIFPGSALSKKPPEFIMAAELVETSRLWARDVARIEPSWVEEIAGDLLRHSYSEPLW
SRKRGAAMVHEKTMLYGVPIVADRLVPYHRVDPAAARDMFIRHALVQGDWNAHHDFYRHN
VDRLEEAAAVEDKARRRGIVVDEETLFDFYDQRLPEKATTARNFDSWWKDTRQSEPDLLN
FDPDALLSDAAGAVTEDEFPDTWATGSLVFDLEYRFEPGHPQDGVTVNIPVPLLAGVTTE
GFDWLVPGLRRELLTELIRSLPKALRRGVVPAPDFADKALPKLLAYESPVTQQLADVLRE
LGGSGINSTDFRPESLPPHLKMTYAAIDKRGKVIDADKDLAALQQRQAGQIRSSISRVSR
SAETGAVAEWTRDSLGTVPEEVTTTVDGHTVQAYPALAISPSGVEVKVMPTKAAAEASQR
TANLTLLMRAITVNTKQMIKGLPLTQRVAVDNYPHGGADGLVQDARVRAIRDSMMKHGGP
ARSPEDFDALKDSVSPEVPAQVRQTIVGLAPALVEYAKVRSELESWSGPAIDDMKSQLGF
LLPDHAVTMHGMEHLRHLPRYLAAMVIRLEELRQDPDKDADRQSEIDEVKSYLKNRLRTL
PAGRENSPAVREILWMIEELRVSLFAQRLGTARPVSARRVQKAIDKLS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgactacccacgagacttcgaacgatacccagccttccgagcccatgtcgagagaccac
ctgatctcggcactaacggatctctccctcgccgacgagctggcattccgccgtcggctg
aagaaggcccgcgcccccaaggccctggccgccatcgcggcggacatggaccgggcccgg
cagaaggtcgcgcgtatcgacgccgccgtccccgacatctcctatcccgagcagctgcct
gtctccgggcgtcgtgacgacatcgccgacgccatccgggaccaccaggtcgtggtcatc
gccggcgagaccggctcgggcaagaccacccagatcccgaagatctgcctggaactggga
cgcggccggcggggtctcatcggccacacgcagccccggcgactcgcggcccgcaccgtg
gccgaacgcgtggcggacgagctggggcaggacatcggcgagacggtcggttacgccatc
cgtttcgacgaccgtgtctccgacaccaccgccgtcaaactcatgaccgacggcatcctc
ctcaccgagatgcagcgcgaccgtttcctcaacgcctacgacaccatcatcatcgacgag
gcccacgagcgcagcctcaacatcgacttcctcctgggttacctcaagcagctcctcccc
cgccgccccgacctcaaggtcatcatcacctcggcgaccatcgacccggagctcttcgcc
caccacttcgccgagcccgacggaacgcccgcgcccatcatcgaggtctccgggcgcacg
ttccccgtggagatccgctaccgcccgctggagttcgaggccgcgggcaagaccgtggac
caggatcccctcgacggtctgtgcgacgcgctcgaggagctcatggccgagggaccgggc
gacattctctgtttcttccccggtcagcgcgacatcaccgacacgatggaggcgatcgag
ggccggaagtggcgtggcatcgaggtcactcccctgtttggccgcctgtccaacgaggag
cagcaccgggtgttctcgccgcactccaagcggcggatcgtcctgtccaccaacattgcg
gagacctcgctgacggtgcccgggatccactacgtcgtggacaccggcaccgcgcgcatt
tcccggtactccacccgtaccaaggtccagcgcctgcccatcgagccgatctcgcaggcg
agcgccaaccagcgctccggtcggtgcgggcgtgtggccgacggcatcgccatccgcctc
tactccgaggaggatttccagtcccgaccggagttcaccgacccggagatcctgcgcacc
aacctcgccagcgtcatcctgcagatgatctcgctgcgcctgggcgacatcgccgcgttt
cccttcgtccagccgccagagcccaaggccgtgcgcgacggcctgggcctgctccacgag
ctcggtgccctcaccgaccgggaggacgacggcctgcccatgctcaccaacatcggccgg
gacctgtcgaagatccccgtcgatccccgcatggcccgcatgctcgtcgaggccgaccgg
ctcgccgtcctcgaggacgtcctcgtgctcgtttccgccatgacgatccaggacgtgcgc
gagcgccccatggacaagcagtcccaggccgatcagtcgcacgcccgcttcaaggacaag
accagcgacttcctctccaccctgcagctgtgggactacatcaacacctcccgcgatgac
ctttccggcaacgcttttcgacgccgcatgaaagacgagtacctccactacatgcgcatc
cgtgagtggtacgacctggtgcgccagctccgcgacaccacccggcgcctgggttggaac
cgtcagtccgccgccgagaaccgcgactccgacggcatccaccgcgcgctgctctccggc
ctgctgtccaacatcggcgcccgcgacggcaacagcaaggaattccagggggcccgcggc
acccgtttcctcatcttcccgggatcggccctgtcgaagaagccgccggagttcatcatg
gcggccgagctcgtggagacctcccgcctgtgggcacgcgacgtggccaggatcgaacca
tcctgggtcgaggagattgccggggatctgctgcgccactcctacagcgaacccctgtgg
tcgcgtaaacgcggcgccgcgatggtgcacgagaagaccatgctctacggggtgcccatc
gtcgcggaccggctggtgccctaccaccgggtcgatcccgcagccgcacgggacatgttc
atccgtcatgccctcgtccagggcgactggaacgctcaccacgacttctaccgccacaac
gtggacaggctcgaggaagccgcggccgtcgaggacaaggcacgccgccgtggcatcgtc
gtcgacgaggagacgctcttcgacttctacgaccagcgactgcccgaaaaagccaccacc
gccaggaacttcgactcctggtggaaggatacccggcagagcgagcccgacctgctcaac
ttcgaccccgacgcgctgctctccgacgccgccggggccgtgaccgaggatgagtttccc
gacacctgggccacgggctcgctggtgttcgacctcgagtaccgcttcgaacccgggcac
ccgcaggacggtgtcaccgtcaacatccccgttcccctgctcgccggggtcaccaccgag
gggttcgactggctcgtgcccgggctgcgcagggagctgctcaccgagctcatccgctcg
ctgcccaaggccctccgccggggcgtggtgccggcgccggatttcgcggacaaggccctg
cccaagctcctcgcctacgagtcacccgtgacgcagcagctggccgatgtactccgtgag
ctcggtggttcgggcatcaactccacggactttcgcccggagtcgcttcccccgcacctc
aagatgacctacgcggccatcgacaaacggggcaaggtcatcgacgccgacaaggatctg
gcggcgcttcagcagcggcaggcgggacagatccggtcgtcgataagccgggtgagccgc
tccgccgagacgggcgcggtcgcggaatggacgcgggacagcctgggcacggtgcccgag
gaggtcacgaccacggtggacggacacaccgtgcaggcctacccagcgctggcgatctcg
ccctccggtgtggaggtcaaggtcatgccgaccaaggcggccgccgaggcctcccagcgc
acggcgaacctcaccctgctcatgcgcgccatcaccgtcaacacgaagcagatgatcaag
ggcttgccgctcacccaacgcgtcgcggtggacaactacccgcacggcggcgccgacggg
ttggtgcaggatgcccgggtgcgggcgatccgcgactcgatgatgaagcacggcggaccc
gcgaggtccccggaggacttcgacgcgctcaaggattccgtgtcacccgaggtcccagcc
caggtgcggcagacgatcgtcggcctggcacccgcgctcgtcgaatacgccaaggtccgg
agcgagctggagtcgtggagcggcccggccatcgacgacatgaagtcgcagctcggtttc
ctgcttccggaccacgccgtaaccatgcacgggatggagcaccttcggcatctgccgagg
tatctcgcggccatggtcatccgtctggaggagctgaggcaggatccggacaaggatgct
gaccgacagtcggagatcgacgaggtgaagtcctatctcaagaacaggctgcgcacgctc
cctgcagggcgggagaactccccggccgtgcgcgagatcctctggatgatcgaggaactc
cgggtcagcctgttcgcgcagcggctcggcactgcccgcccggtgtccgcccgacgtgtt
cagaaggccatcgacaaactctcctga
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