Corynebacterium doosanense: CDOO_08630
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Entry
CDOO_08630 CDS
T03413
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cdo
Corynebacterium doosanense
Pathway
cdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDOO_08630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdo03019
]
CDOO_08630
Messenger RNA biogenesis [BR:
cdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDOO_08630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AIT61317
UniProt:
A0A097IGU0
LinkDB
All DBs
Position
complement(1713222..1715351)
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AA seq
709 aa
AA seq
DB search
MTEPRKSSRKVTRKAGPPEADAVAPVFQAPEVPASTPDAAPSQAAESQEPAENAPREQKN
ESREDNGGNGNGRSRGRRGGRGRGRSGGNGGSGNNERGNGDRSDRSERGDRNQGGNGNNR
NVVKSMQGNDLTRRLPEPPQQPRGSVRLYNLGGISEIGRNMTVFEYDGRLLIVDVGVLFP
SSGEPGVDLILPDFGPIENKLDKIDGIVITHGHEDHIGAIPWILKLKHDIPIYSAKFTLA
LIAAKTKEHRQRPKMIEVNKDSDLNIGKFRLRFWTVGHSIPDALGLSIKVGGNHIVMTGD
IKVDQTPYDGKPTDLPALSRFGDEGIDLFLVDSTNATTPGISNSELGIEDTLIRLTQRGR
QRVIVSSFASNVSRVQMAVNAAVATNRKVAFNGRSMIRNMEIAEKMGYLKAPKGTIVSVD
DASKMAPHKVMLITTGTQGEPMAALSRMSRREHRQITIRDGDMIIMSSSMIPGNEEAIYA
VLNNLSQIGAEVITNKDANVHASGHGYAGELLFLYNAARPKNVMPVHGEWRHIRANKELA
IATGVPRDNVVLAQNGVVVDLLNGKARVSGQLQVGHLYVDGVTMGDVDADVLSDRTSLGA
GGAVSITCIVDDVTGRLLESPRVSTTGFSDDDRGVVPEVTELVENTMSDLAGQGENDTYR
MVQQLRRGVSRAIEQKWKREPVILPTVIAMNSGSRVIGDEDVEVSRESL
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaccccgcaagagctcccggaaagtcacccgcaaggccgggcccccggaagca
gacgctgtcgcacccgtgttccaggcacccgaggttcccgcctcgacgccggacgcagcc
ccctcccaggcggctgaatcccaggaaccggccgagaacgctccgcgtgagcagaagaac
gagtcccgcgaggacaacggcggcaacggcaacggccgttcccgcggtcgccgtggcggt
cgcggccgtggtcgctccggcggcaacggtggtagcggcaacaacgagcgcggaaacggc
gaccgcagcgatcgcagtgagcgtggcgaccgtaaccagggcggaaacggcaacaaccgc
aacgtcgtgaagtccatgcagggcaacgacctcacccgccgcctcccggagccgccgcag
cagccccgcggcagcgtccggctgtacaacctcggcggcatctccgagatcggccgcaac
atgaccgtctttgagtatgacggccgtctgctcatcgtcgacgtgggtgtgctcttcccg
tcctcgggtgagcccggcgtcgacctgattctcccggacttcggcccgatcgagaacaag
ctcgacaagatcgacggcatcgtcatcacgcacggccacgaggaccacatcggtgccatc
ccctggatcctcaagctcaagcacgacatccccatctactcggccaagttcacgctggcg
ctcatcgcggcgaagaccaaggagcaccgccagcgcccgaagatgatcgaggtgaacaag
gactccgatctcaacatcggcaagttccgcctgcgcttctggaccgtcggccactccatc
cccgacgcgctcggcctgtccatcaaggtcggcggcaaccacatcgtcatgaccggcgac
atcaaggtcgaccagacgccctacgacggcaagcccaccgacctgccggcactgtcgcgc
ttcggcgacgaaggcatcgacctcttcctggtcgactccaccaacgccaccacgccgggc
atctccaattcggagctcggcatcgaggacaccctgatccgtctcacccagcgtggacgc
cagcgggtcatcgtctcgtcgttcgcgtcgaacgtctcgcgtgtgcagatggcggtcaac
gcggccgtggccacgaaccgcaaggttgccttcaacggccgctcgatgatccgcaacatg
gagatcgccgagaagatgggttacctcaaggcaccgaagggcacgatcgtgtccgtcgat
gacgcctcgaagatggccccgcacaaggtcatgctcatcaccaccggtactcagggtgag
ccgatggcggcgctgtcgcgcatgtcgcgtcgcgaacaccgccagatcaccatccgtgac
ggcgacatgatcatcatgtcctcctcgatgatcccgggcaacgaagaagccatctacgcg
gtgctcaacaacctctcgcagatcggcgccgaggtcatcaccaacaaggacgccaacgtc
cacgcctcgggccacggctacgccggcgagctgctgttcctctacaacgccgcccgcccg
aagaacgttatgccggtgcacggcgagtggcgccacatccgcgcgaacaaggaactggcc
atcgccaccggcgtcccccgcgacaacgtggtgctggcgcagaacggtgtcgtcgtggac
ctgctcaacggcaaggcccgcgtcagcggccagctccaggtcggccacctctacgtcgac
ggtgtcaccatgggtgatgtcgacgcggacgtgctgtcggaccgcaccagcctcggcgcg
ggtggagccgtgtccatcacctgcatcgttgacgacgtcaccggacgcctcctagagtcg
ccccgcgtctcgacgaccggtttctccgacgacgaccgtggagtcgttccggaggtcacg
gaactggtggagaacaccatgtccgacctcgccggccagggtgagaacgacacctaccgg
atggtgcagcagctgcgccgcggcgtctctcgcgcgatcgagcagaagtggaagcgcgag
ccggtgatcctgccgaccgtcatcgccatgaactcgggcagccgggtcatcggggacgag
gacgtcgaagtttcccgagagtcgctgtag
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