Cellulomonas dongxiuzhuiae: KKR89_09410
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Entry
KKR89_09410 CDS
T08574
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cdon
Cellulomonas dongxiuzhuiae
Pathway
cdon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KKR89_09410 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdon03400
]
KKR89_09410 (ligD)
Enzymes [BR:
cdon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KKR89_09410 (ligD)
DNA repair and recombination proteins [BR:
cdon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KKR89_09410 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QWC14609
LinkDB
All DBs
Position
2089675..2090610
Genome browser
AA seq
311 aa
AA seq
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MEPMLATPAPAPAALPRGRDWVFEVKWDGVRVLADVRDGVLRLTSRNERDVTPAYPELGG
LAALGDVLLDGEVVLMDAGRPSFAALAERMHVREARRAEALAAARPVTYLAFDVLRHDGR
DLTGLPLEARRAVLDALALPEHVQPSPWYDDGDDLWRVTAAHGLEGVVAKRRDAPYRPGR
RSPDWVKAAHRLTRTALVGGWRPESTGTGRLGALLLGAPDEDGGLRYLGRAGSGLGGGAA
RLMRELLSTHERDGSPFADDVPAVDARGAVWCDPVVVVEVLYLLRTPSGRLRQPVVRGVR
TDVAADPWGQP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtggagcccatgctcgccaccccggcgcctgcacccgcggcgctcccgcgcggccgcgac
tgggtgttcgaggtcaagtgggacggtgtccgggtcctcgccgacgtgcgggacggagtg
ctgcggctgaccagccgcaacgagcgggacgtcacgcccgcctaccccgagctcggcggg
ctcgcggccctcggtgacgtgctgctggacggcgaggtggtgctcatggacgccgggcgc
ccctcgttcgcggccctggccgagcggatgcacgtgcgggaggcacggcgggccgaggcg
ctcgcggcggcccgcccggtcacctacctcgccttcgacgtgctgcgccacgacgggcgt
gacctgaccggcctgccgctggaggcgcgccgcgcggtgctcgacgctctggcgctcccg
gagcacgtccagccgtcgccctggtacgacgacggtgacgacctgtggcgggtcacggcc
gcgcacggcctggagggcgtcgtcgccaagcgccgcgacgcgccgtaccgacccggacgg
cggtcgcccgactgggtgaaagccgcacaccggcttacccggacggccctcgtcgggggg
tggcgcccggagtcgaccggcaccgggcgcctcggcgcgctcctgctgggcgcgcccgac
gaggacggcggcctgcgctacctgggccgggccgggtccgggctcgggggcggcgccgca
cgcctgatgcgcgagctcctctcgacgcacgagcgcgacggcagccccttcgccgacgac
gtgcccgccgtggacgcgcgcggcgccgtctggtgtgatcccgtcgtggtcgtcgaggtg
ctgtacctgctccgcacaccgtcgggtcgcctccggcagccggtcgtgcgcggggtccgg
accgacgtggccgccgacccctggggacagccgtga
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